Human Phenotype Ontology 
Grandparent Node:
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Abnormal nervous system morphology (HP:0012639)help
Parent Node:
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Cephalocele (HP:0011815)help
Parent Node:
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Morphological central nervous system abnormality (HP:0002011)help
..Starting node
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Encephalocele (HP:0002084)help
Term ID: 2084
Name: Encephalocele
Synonym: Bifid skull; Cranium bifidum
Definition: A neural tube defect characterized by sac-like protrusions of the brain and the membranes that cover it through openings in the skull.
Comments:
Reference: HP:0002084
Genes and Diseases:
 
       Child Nodes:
........expandOccipital encephalocele (HP:0002085) help
........expandCranium bifidum occultum (HP:0004423) help
........expandMeningoencephalocele (HP:0006888) help
........expandAnterior basal encephalocele (HP:0006992) help
........expandAnterior encephalocele (HP:0007035) help
........expandOrbital encephalocele (HP:0007115) help
........expandFrontal encephalocele (HP:0007330) help
................... HP:0011818 Nasofrontal encephalocele
........expandParietal encephalocele (HP:0011816) help
........expandBasal encephalocele (HP:0011817) help
................... HP:0004478 Ethmoidal encephalocele

 Sister Nodes: 
..expandAbnormal cerebrospinal fluid morphology (HP:0002921) help
..expandAbnormal CNS myelination (HP:0011400) help
..expandAbnormal glial cell morphology (HP:0100705) help
..expandAbnormal meningeal morphology (HP:0010651) help
..expandAbnormal neural tube morphology (HP:0410043) help
..expandAbnormal subarachnoid space morphology (HP:0012703) help
..expandAbnormality of brain morphology (HP:0012443) help
..expandAbnormality of neuronal migration (HP:0002269) help
..expandAbnormality of the spinal cord (HP:0002143) help
..expandAlzheimer disease (HP:0002511) help
..expandAplasia/Hypoplasia involving the central nervous system (HP:0002977) help
..expandAtrophy/Degeneration affecting the central nervous system (HP:0007367) help
..expandCentral nervous system cyst (HP:0030724) help
..expandMorphological abnormality of the pyramidal tract (HP:0002062) help
..expandNeoplasm of the central nervous system (HP:0100006) help
..expandUnusual CNS infection (HP:0011450) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0002084HP:0002084Encephalocele0AHI1 CL E G H5480621575ORPHA:475Joubert syndromeHP:0040283 - Occasional175
HP:0002084HP:0002084Encephalocele0AHI1 CL E G H5480621575ORPHA:220493Joubert syndrome with ocular defectHP:0040283 - Occasional175
HP:0002084HP:0002084Encephalocele0AIPL1 CL E G H23746359ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent114
HP:0002084HP:0002084Encephalocele0ALX1 CL E G H80921494ORPHA:306542Frontonasal dysplasia-severe microphthalmia-severe facial clefting syndrome5
HP:0002084HP:0002084Encephalocele0ALX3 CL E G H257449OMIM:136760Frontonasal dysplasia 19
HP:0002084HP:0002084Encephalocele0ALX3 CL E G H257449ORPHA:391474FrontorhinyHP:0040282 - Frequent9
HP:0002084HP:0002084Encephalocele0ALX4 CL E G H60529450ORPHA:60015Enlarged parietal foramina132
HP:0002084HP:0002084Encephalocele0ALX4 CL E G H60529450OMIM:613451Frontonasal dysplasia 2.132
HP:0002084HP:0002084Encephalocele0ALX4 CL E G H60529450ORPHA:228390Frontonasal dysplasia-alopecia-genital anomalies syndromeHP:0040281 - Very frequent132
HP:0002084HP:0002084Encephalocele0ALX4 CL E G H60529450OMIM:609597Parietal foramina 2.132
HP:0002084HP:0002084Encephalocele0ARHGAP31 CL E G H5751429216ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional147
HP:0002084HP:0002084Encephalocele0ARHGAP31 CL E G H5751429216OMIM:100300Adams-Oliver syndrome 1.147
HP:0002084HP:0002084Encephalocele0ARL13B CL E G H20089425419ORPHA:475Joubert syndromeHP:0040283 - Occasional62
HP:0002084HP:0002084Encephalocele0ARL13B CL E G H20089425419OMIM:612291JOUBERT SYNDROME 8; JBTS862
HP:0002084HP:0002084Encephalocele0ARL3 CL E G H403694ORPHA:475Joubert syndromeHP:0040283 - Occasional1
HP:0002084HP:0002084Encephalocele0ARMC9 CL E G H8021020730ORPHA:475Joubert syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0B4GAT1 CL E G H1104115685OMIM:615287MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE ANOMALIES), TYPE A, 1317
HP:0002084HP:0002084Encephalocele0B9D1 CL E G H2707724123ORPHA:475Joubert syndromeHP:0040283 - Occasional28
HP:0002084HP:0002084Encephalocele0B9D1 CL E G H2707724123ORPHA:564Meckel syndromeHP:0040281 - Very frequent28
HP:0002084HP:0002084Encephalocele0B9D1 CL E G H2707724123OMIM:614209Meckel syndrome, type 928
HP:0002084HP:0002084Encephalocele0B9D2 CL E G H8077628636ORPHA:475Joubert syndromeHP:0040283 - Occasional34
HP:0002084HP:0002084Encephalocele0B9D2 CL E G H8077628636ORPHA:564Meckel syndromeHP:0040281 - Very frequent34
HP:0002084HP:0002084Encephalocele0B9D2 CL E G H8077628636OMIM:614175Meckel syndrome, type 1034
HP:0002084HP:0002084Encephalocele0C2CD3 CL E G H2600524564OMIM:615948Orofaciodigital syndrome XIV27
HP:0002084HP:0002084Encephalocele0CBY1 CL E G H257761307ORPHA:475Joubert syndromeHP:0040283 - Occasional1
HP:0002084HP:0002084Encephalocele0CC2D2A CL E G H5754529253OMIM:612285Joubert syndrome 9247
HP:0002084HP:0002084Encephalocele0CC2D2A CL E G H5754529253ORPHA:1454Joubert syndrome with hepatic defect247
HP:0002084HP:0002084Encephalocele0CC2D2A CL E G H5754529253ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional247
HP:0002084HP:0002084Encephalocele0CC2D2A CL E G H5754529253ORPHA:564Meckel syndromeHP:0040281 - Very frequent247
HP:0002084HP:0002084Encephalocele0CC2D2A CL E G H5754529253OMIM:612284Meckel syndrome, type 6247
HP:0002084HP:0002084Encephalocele0CDON CL E G H5093717104ORPHA:280195Septopreoptic holoprosencephaly200
HP:0002084HP:0002084Encephalocele0CEP104 CL E G H973124866ORPHA:475Joubert syndromeHP:0040283 - Occasional5
HP:0002084HP:0002084Encephalocele0CEP120 CL E G H15324126690ORPHA:475Joubert syndromeHP:0040283 - Occasional7
HP:0002084HP:0002084Encephalocele0CEP120 CL E G H15324126690ORPHA:220493Joubert syndrome with ocular defectHP:0040283 - Occasional7
HP:0002084HP:0002084Encephalocele0CEP120 CL E G H15324126690OMIM:616300Short-Rib thoracic dysplasia 13 with or without polydactyly.7
HP:0002084HP:0002084Encephalocele0CEP290 CL E G H8018429021OMIM:610188Joubert syndrome 5342
HP:0002084HP:0002084Encephalocele0CEP290 CL E G H8018429021ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional342
HP:0002084HP:0002084Encephalocele0CEP290 CL E G H8018429021ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent342
HP:0002084HP:0002084Encephalocele0CEP290 CL E G H8018429021ORPHA:564Meckel syndromeHP:0040281 - Very frequent342
HP:0002084HP:0002084Encephalocele0CEP290 CL E G H8018429021OMIM:611134Meckel syndrome, type 4.342
HP:0002084HP:0002084Encephalocele0CEP41 CL E G H9568112370ORPHA:475Joubert syndromeHP:0040283 - Occasional90
HP:0002084HP:0002084Encephalocele0CEP41 CL E G H9568112370ORPHA:220493Joubert syndrome with ocular defectHP:0040283 - Occasional90
HP:0002084HP:0002084Encephalocele0COL18A1 CL E G H807812195ORPHA:1571Knobloch syndrome177
HP:0002084HP:0002084Encephalocele0COL18A1 CL E G H807812195OMIM:267750Knobloch syndrome 1177
HP:0002084HP:0002084Encephalocele0CPLANE1 CL E G H6525025801ORPHA:475Joubert syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0CRB1 CL E G H234182343ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent156
HP:0002084HP:0002084Encephalocele0CRPPA CL E G H72992037276OMIM:614643Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7.
HP:0002084HP:0002084Encephalocele0CRX CL E G H14062383ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent158
HP:0002084HP:0002084Encephalocele0CSPP1 CL E G H7984826193ORPHA:475Joubert syndromeHP:0040283 - Occasional57
HP:0002084HP:0002084Encephalocele0CSPP1 CL E G H7984826193OMIM:615636Joubert syndrome 2157
HP:0002084HP:0002084Encephalocele0CSPP1 CL E G H7984826193ORPHA:397715Joubert syndrome with Jeune asphyxiating thoracic dystrophy57
HP:0002084HP:0002084Encephalocele0CSPP1 CL E G H7984826193ORPHA:564Meckel syndromeHP:0040281 - Very frequent57
HP:0002084HP:0002084Encephalocele0CYP26B1 CL E G H5660320581OMIM:614416RADIOHUMERAL FUSIONS WITH OTHER SKELETAL AND CRANIOFACIAL ANOMALIES; RHFCA4
HP:0002084HP:0002084Encephalocele0DISP1 CL E G H8497619711ORPHA:280195Septopreoptic holoprosencephaly22
HP:0002084HP:0002084Encephalocele0DLL1 CL E G H285142908ORPHA:280195Septopreoptic holoprosencephaly3
HP:0002084HP:0002084Encephalocele0DLL4 CL E G H545672910ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional9
HP:0002084HP:0002084Encephalocele0DOCK6 CL E G H5757219189ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional18
HP:0002084HP:0002084Encephalocele0EOGT CL E G H28520328526ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional4
HP:0002084HP:0002084Encephalocele0ESCO2 CL E G H15757027230OMIM:268300Roberts syndrome92
HP:0002084HP:0002084Encephalocele0FGF8 CL E G H22533686ORPHA:280195Septopreoptic holoprosencephaly17
HP:0002084HP:0002084Encephalocele0FGFR1 CL E G H22603688ORPHA:2117Hartsfield syndromeHP:0040281 - Very frequent172
HP:0002084HP:0002084Encephalocele0FGFR3 CL E G H22613690ORPHA:93274Thanatophoric dysplasia type 2HP:0040283 - Occasional145
HP:0002084HP:0002084Encephalocele0FKRP CL E G H7914717997ORPHA:370959Congenital muscular dystrophy with cerebellar involvement157
HP:0002084HP:0002084Encephalocele0FKRP CL E G H7914717997OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1157
HP:0002084HP:0002084Encephalocele0FKTN CL E G H22183622OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1184
HP:0002084HP:0002084Encephalocele0FKTN CL E G H22183622OMIM:253800MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE ANOMALIES), TYPE A, 4.184
HP:0002084HP:0002084Encephalocele0FLNA CL E G H23163754ORPHA:90652Otopalatodigital syndrome type 2HP:0040283 - Occasional493
HP:0002084HP:0002084Encephalocele0FLNB CL E G H23173755OMIM:108720Atelosteogenesis, type I.233
HP:0002084HP:0002084Encephalocele0FOXH1 CL E G H89283814ORPHA:280195Septopreoptic holoprosencephaly48
HP:0002084HP:0002084Encephalocele0FRAS1 CL E G H8014419185OMIM:219000Fraser syndrome.353
HP:0002084HP:0002084Encephalocele0FRAS1 CL E G H8014419185ORPHA:2052Fraser syndromeHP:0040283 - Occasional353
HP:0002084HP:0002084Encephalocele0FREM2 CL E G H34164025396ORPHA:2052Fraser syndromeHP:0040283 - Occasional263
HP:0002084HP:0002084Encephalocele0GAS1 CL E G H26194165ORPHA:280195Septopreoptic holoprosencephaly2
HP:0002084HP:0002084Encephalocele0GDF6 CL E G H3922554221ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent64
HP:0002084HP:0002084Encephalocele0GLI2 CL E G H27364318ORPHA:280195Septopreoptic holoprosencephaly173
HP:0002084HP:0002084Encephalocele0GMPPB CL E G H2992522932ORPHA:370959Congenital muscular dystrophy with cerebellar involvement34
HP:0002084HP:0002084Encephalocele0GRIP1 CL E G H2342618708ORPHA:2052Fraser syndromeHP:0040283 - Occasional80
HP:0002084HP:0002084Encephalocele0GUCY2D CL E G H30004689ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent124
HP:0002084HP:0002084Encephalocele0HOXD13 CL E G H32395136ORPHA:887VACTERL/VATER association25
HP:0002084HP:0002084Encephalocele0HSPG2 CL E G H33395273ORPHA:1865Dyssegmental dysplasia, Silverman-Handmaker typeHP:0040283 - Occasional345
HP:0002084HP:0002084Encephalocele0HYLS1 CL E G H21984426558ORPHA:475Joubert syndromeHP:0040283 - Occasional31
HP:0002084HP:0002084Encephalocele0IFT140 CL E G H974229077ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent148
HP:0002084HP:0002084Encephalocele0IMPDH1 CL E G H36146052ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent52
HP:0002084HP:0002084Encephalocele0INPP5E CL E G H5662321474ORPHA:475Joubert syndromeHP:0040283 - Occasional111
HP:0002084HP:0002084Encephalocele0INPP5E CL E G H5662321474ORPHA:1454Joubert syndrome with hepatic defect111
HP:0002084HP:0002084Encephalocele0INPP5E CL E G H5662321474ORPHA:220493Joubert syndrome with ocular defectHP:0040283 - Occasional111
HP:0002084HP:0002084Encephalocele0IQCB1 CL E G H965728949ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent61
HP:0002084HP:0002084Encephalocele0KATNIP CL E G H2324729068ORPHA:475Joubert syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0KCNJ13 CL E G H37696259ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent42
HP:0002084HP:0002084Encephalocele0KIAA0586 CL E G H978619960ORPHA:475Joubert syndromeHP:0040283 - Occasional24
HP:0002084HP:0002084Encephalocele0KIAA0586 CL E G H978619960ORPHA:397715Joubert syndrome with Jeune asphyxiating thoracic dystrophy24
HP:0002084HP:0002084Encephalocele0LAMB1 CL E G H39126486ORPHA:352682Cobblestone lissencephaly without muscular or ocular involvement71
HP:0002084HP:0002084Encephalocele0LAMB1 CL E G H39126486OMIM:615191Lissencephaly 571
HP:0002084HP:0002084Encephalocele0LARGE1 CL E G H92156511OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1136
HP:0002084HP:0002084Encephalocele0LCA5 CL E G H16769131923ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent70
HP:0002084HP:0002084Encephalocele0LRAT CL E G H92276685ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent62
HP:0002084HP:0002084Encephalocele0MKS1 CL E G H549037121ORPHA:475Joubert syndromeHP:0040283 - Occasional127
HP:0002084HP:0002084Encephalocele0MKS1 CL E G H549037121ORPHA:220493Joubert syndrome with ocular defectHP:0040283 - Occasional127
HP:0002084HP:0002084Encephalocele0MKS1 CL E G H549037121ORPHA:564Meckel syndromeHP:0040281 - Very frequent127
HP:0002084HP:0002084Encephalocele0MKS1 CL E G H549037121OMIM:249000Meckel syndrome 1127
HP:0002084HP:0002084Encephalocele0MSX2 CL E G H44887392ORPHA:60015Enlarged parietal foramina45
HP:0002084HP:0002084Encephalocele0MSX2 CL E G H44887392OMIM:168500Parietal foramina.45
HP:0002084HP:0002084Encephalocele0NMNAT1 CL E G H6480217877ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent15
HP:0002084HP:0002084Encephalocele0NODAL CL E G H48387865ORPHA:280195Septopreoptic holoprosencephaly45
HP:0002084HP:0002084Encephalocele0NOTCH1 CL E G H48517881ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional452
HP:0002084HP:0002084Encephalocele0NPHP1 CL E G H48677905ORPHA:220497Joubert syndrome with renal defectHP:0040283 - Occasional85
HP:0002084HP:0002084Encephalocele0PAK2 CL E G H50628591OMIM:618458
HP:0002084HP:0002084Encephalocele0PAK2 CL E G H50628591ORPHA:1571Knobloch syndrome
HP:0002084HP:0002084Encephalocele0PCYT1A CL E G H51308754ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent11
HP:0002084HP:0002084Encephalocele0PIBF1 CL E G H1046423352ORPHA:475Joubert syndromeHP:0040283 - Occasional4
HP:0002084HP:0002084Encephalocele0POLR1B CL E G H8417220454ORPHA:861Treacher-Collins syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0POLR1C CL E G H953320194ORPHA:861Treacher-Collins syndromeHP:0040283 - Occasional38
HP:0002084HP:0002084Encephalocele0POLR1D CL E G H5108220422ORPHA:861Treacher-Collins syndromeHP:0040283 - Occasional31
HP:0002084HP:0002084Encephalocele0POMGNT1 CL E G H5562419139ORPHA:370959Congenital muscular dystrophy with cerebellar involvement180
HP:0002084HP:0002084Encephalocele0POMK CL E G H8419726267ORPHA:370959Congenital muscular dystrophy with cerebellar involvement18
HP:0002084HP:0002084Encephalocele0POMT1 CL E G H105859202ORPHA:370959Congenital muscular dystrophy with cerebellar involvement213
HP:0002084HP:0002084Encephalocele0POMT1 CL E G H105859202OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1213
HP:0002084HP:0002084Encephalocele0POMT2 CL E G H2995419743ORPHA:370959Congenital muscular dystrophy with cerebellar involvement221
HP:0002084HP:0002084Encephalocele0POMT2 CL E G H2995419743OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1221
HP:0002084HP:0002084Encephalocele0POMT2 CL E G H2995419743OMIM:613150Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 2HP:0040283 - Occasional221
HP:0002084HP:0002084Encephalocele0PTCH1 CL E G H57279585ORPHA:280195Septopreoptic holoprosencephaly665
HP:0002084HP:0002084Encephalocele0RBPJ CL E G H35165724ORPHA:974Adams-Oliver syndromeHP:0040283 - Occasional3
HP:0002084HP:0002084Encephalocele0RD3 CL E G H34303519689ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent95
HP:0002084HP:0002084Encephalocele0RDH12 CL E G H14522619977ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent45
HP:0002084HP:0002084Encephalocele0RPE65 CL E G H612110294ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent129
HP:0002084HP:0002084Encephalocele0RPGRIP1 CL E G H5709613436ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent109
HP:0002084HP:0002084Encephalocele0RPGRIP1 CL E G H5709613436ORPHA:564Meckel syndromeHP:0040281 - Very frequent109
HP:0002084HP:0002084Encephalocele0RPGRIP1L CL E G H2332229168OMIM:611560Joubert syndrome 7.167
HP:0002084HP:0002084Encephalocele0RPGRIP1L CL E G H2332229168ORPHA:1454Joubert syndrome with hepatic defect167
HP:0002084HP:0002084Encephalocele0RPGRIP1L CL E G H2332229168ORPHA:220497Joubert syndrome with renal defectHP:0040283 - Occasional167
HP:0002084HP:0002084Encephalocele0RPGRIP1L CL E G H2332229168ORPHA:564Meckel syndromeHP:0040281 - Very frequent167
HP:0002084HP:0002084Encephalocele0RPGRIP1L CL E G H2332229168OMIM:611561Meckel syndrome, type 5167
HP:0002084HP:0002084Encephalocele0SF3B2 CL E G H1099210769OMIM:164210Hemifacial microsomia2
HP:0002084HP:0002084Encephalocele0SHH CL E G H646910848ORPHA:280195Septopreoptic holoprosencephaly67
HP:0002084HP:0002084Encephalocele0SIX3 CL E G H649610889ORPHA:280195Septopreoptic holoprosencephaly32
HP:0002084HP:0002084Encephalocele0SMO CL E G H660811119OMIM:241800Hypothalamic hamartomascongenital hypothalamic hamartoma syndrome, included22
HP:0002084HP:0002084Encephalocele0SPATA7 CL E G H5581220423ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent48
HP:0002084HP:0002084Encephalocele0STIL CL E G H649110879ORPHA:280195Septopreoptic holoprosencephaly99
HP:0002084HP:0002084Encephalocele0SUFU CL E G H5168416466ORPHA:475Joubert syndromeHP:0040283 - Occasional124
HP:0002084HP:0002084Encephalocele0TCOF1 CL E G H694911654ORPHA:861Treacher-Collins syndromeHP:0040283 - Occasional140
HP:0002084HP:0002084Encephalocele0TCTN1 CL E G H7960026113ORPHA:475Joubert syndromeHP:0040283 - Occasional45
HP:0002084HP:0002084Encephalocele0TCTN1 CL E G H7960026113ORPHA:564Meckel syndromeHP:0040281 - Very frequent45
HP:0002084HP:0002084Encephalocele0TCTN2 CL E G H7986725774ORPHA:475Joubert syndromeHP:0040283 - Occasional76
HP:0002084HP:0002084Encephalocele0TCTN2 CL E G H7986725774ORPHA:564Meckel syndromeHP:0040281 - Very frequent76
HP:0002084HP:0002084Encephalocele0TCTN2 CL E G H7986725774OMIM:613885Meckel syndrome, type 8.76
HP:0002084HP:0002084Encephalocele0TCTN3 CL E G H2612324519OMIM:614815Joubert syndrome 1831
HP:0002084HP:0002084Encephalocele0TCTN3 CL E G H2612324519ORPHA:564Meckel syndromeHP:0040281 - Very frequent31
HP:0002084HP:0002084Encephalocele0TDGF1 CL E G H699711701ORPHA:280195Septopreoptic holoprosencephaly1
HP:0002084HP:0002084Encephalocele0TGIF1 CL E G H705011776ORPHA:280195Septopreoptic holoprosencephaly32
HP:0002084HP:0002084Encephalocele0TMEM107 CL E G H8431428128ORPHA:564Meckel syndromeHP:0040281 - Very frequent4
HP:0002084HP:0002084Encephalocele0TMEM107 CL E G H8431428128OMIM:617562Meckel syndrome 134
HP:0002084HP:0002084Encephalocele0TMEM138 CL E G H5152426944OMIM:614465JOUBERT SYNDROME 16; JBTS1639
HP:0002084HP:0002084Encephalocele0TMEM138 CL E G H5152426944ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional39
HP:0002084HP:0002084Encephalocele0TMEM216 CL E G H5125925018OMIM:608091Joubert syndrome 2.45
HP:0002084HP:0002084Encephalocele0TMEM216 CL E G H5125925018ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional45
HP:0002084HP:0002084Encephalocele0TMEM216 CL E G H5125925018ORPHA:564Meckel syndromeHP:0040281 - Very frequent45
HP:0002084HP:0002084Encephalocele0TMEM216 CL E G H5125925018OMIM:603194Meckel syndrome, type 245
HP:0002084HP:0002084Encephalocele0TMEM218 CL E G H21985427344ORPHA:475Joubert syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0TMEM218 CL E G H21985427344OMIM:619562JOUBERT SYNDROME 39; JBTS39
HP:0002084HP:0002084Encephalocele0TMEM231 CL E G H7958337234ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional33
HP:0002084HP:0002084Encephalocele0TMEM231 CL E G H7958337234ORPHA:564Meckel syndromeHP:0040281 - Very frequent33
HP:0002084HP:0002084Encephalocele0TMEM231 CL E G H7958337234OMIM:615397Meckel syndrome, type 1133
HP:0002084HP:0002084Encephalocele0TMEM237 CL E G H6506214432ORPHA:475Joubert syndromeHP:0040283 - Occasional82
HP:0002084HP:0002084Encephalocele0TMEM237 CL E G H6506214432OMIM:614424Joubert syndrome 14.82
HP:0002084HP:0002084Encephalocele0TMEM237 CL E G H6506214432ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional82
HP:0002084HP:0002084Encephalocele0TMEM237 CL E G H6506214432ORPHA:220497Joubert syndrome with renal defectHP:0040283 - Occasional82
HP:0002084HP:0002084Encephalocele0TMEM237 CL E G H6506214432ORPHA:564Meckel syndromeHP:0040281 - Very frequent82
HP:0002084HP:0002084Encephalocele0TMEM67 CL E G H9114728396OMIM:216360Coach syndrome 1166
HP:0002084HP:0002084Encephalocele0TMEM67 CL E G H9114728396ORPHA:475Joubert syndromeHP:0040283 - Occasional166
HP:0002084HP:0002084Encephalocele0TMEM67 CL E G H9114728396ORPHA:1454Joubert syndrome with hepatic defect166
HP:0002084HP:0002084Encephalocele0TMEM67 CL E G H9114728396ORPHA:564Meckel syndromeHP:0040281 - Very frequent166
HP:0002084HP:0002084Encephalocele0TMEM67 CL E G H9114728396OMIM:607361Meckel syndrome 3166
HP:0002084HP:0002084Encephalocele0TMTC3 CL E G H16041826899OMIM:617255Lissencephaly 85
HP:0002084HP:0002084Encephalocele0TOGARAM1 CL E G H2311619959ORPHA:475Joubert syndromeHP:0040283 - Occasional
HP:0002084HP:0002084Encephalocele0TUBB4B CL E G H1038320771ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent
HP:0002084HP:0002084Encephalocele0TULP1 CL E G H728712423ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent66
HP:0002084HP:0002084Encephalocele0TXNDC15 CL E G H7977020652OMIM:6198792
HP:0002084HP:0002084Encephalocele0TXNDC15 CL E G H7977020652ORPHA:564Meckel syndromeHP:0040281 - Very frequent2
HP:0002084HP:0002084Encephalocele0USP45 CL E G H8501520080ORPHA:65Leber congenital amaurosisHP:0040282 - Frequent
HP:0002084HP:0002084Encephalocele0VSX1 CL E G H3081312723OMIM:614195Craniofacial anomalies and anterior segment dysgenesis syndrome47
HP:0002084HP:0002084Encephalocele0ZIC2 CL E G H754612873ORPHA:280195Septopreoptic holoprosencephaly34
HP:0002084HP:0002084Encephalocele0ZNF423 CL E G H2309016762ORPHA:2318Joubert syndrome with oculorenal defectHP:0040283 - Occasional49
HP:0002084HP:0002084Encephalocele0ZSWIM6 CL E G H5768829316OMIM:603671Acromelic frontonasal dysostosis.5
HP:0002084HP:0002084Encephalocele0ZSWIM6 CL E G H5768829316ORPHA:1827Acromelic frontonasal dysplasiaHP:0040281 - Very frequent5
HP:0002084HP:0011816Parietal encephalocele1 CL E G H
HP:0002084HP:0007115Orbital encephalocele1 CL E G H
HP:0002084HP:0007035Anterior encephalocele1 CL E G H
HP:0002084HP:0004423Cranium bifidum occultum1ALX1 CL E G H80921494ORPHA:306542Frontonasal dysplasia-severe microphthalmia-severe facial clefting syndromeHP:0040283 - Occasional5
HP:0002084HP:0004423Cranium bifidum occultum1ALX3 CL E G H257449OMIM:136760Frontonasal dysplasia 1.9
HP:0002084HP:0006992Anterior basal encephalocele1ALX3 CL E G H257449OMIM:136760Frontonasal dysplasia 1.9
HP:0002084HP:0004423Cranium bifidum occultum1ALX3 CL E G H257449ORPHA:391474FrontorhinyHP:0040282 - Frequent9
HP:0002084HP:0011817Basal encephalocele1ALX3 CL E G H257449ORPHA:391474FrontorhinyHP:0040282 - Frequent9
HP:0002084HP:0002085Occipital encephalocele1ALX4 CL E G H60529450ORPHA:60015Enlarged parietal foraminaHP:0040284 - Very rare132
HP:0002084HP:0002085Occipital encephalocele1ARL13B CL E G H20089425419OMIM:612291JOUBERT SYNDROME 8; JBTS862
HP:0002084HP:0002085Occipital encephalocele1B4GAT1 CL E G H1104115685OMIM:615287MUSCULAR DYSTROPHY-DYSTROGLYCANOPATHY (CONGENITAL WITH BRAIN AND EYE ANOMALIES), TYPE A, 13.17
HP:0002084HP:0002085Occipital encephalocele1B9D1 CL E G H2707724123OMIM:614209Meckel syndrome, type 9.28
HP:0002084HP:0002085Occipital encephalocele1B9D2 CL E G H8077628636OMIM:614175Meckel syndrome, type 10.34
HP:0002084HP:0002085Occipital encephalocele1C2CD3 CL E G H2600524564OMIM:615948Orofaciodigital syndrome XIV.27
HP:0002084HP:0002085Occipital encephalocele1CC2D2A CL E G H5754529253ORPHA:1454Joubert syndrome with hepatic defectHP:0040283 - Occasional247
HP:0002084HP:0002085Occipital encephalocele1CC2D2A CL E G H5754529253OMIM:612284Meckel syndrome, type 6HP:0040280 - ObligateHP:0003577 - Congenital onset247
HP:0002084HP:0011817Basal encephalocele1CDON CL E G H5093717104ORPHA:280195Septopreoptic holoprosencephaly200
HP:0002084HP:0002085Occipital encephalocele1CEP290 CL E G H8018429021OMIM:610188Joubert syndrome 5342
HP:0002084HP:0002085Occipital encephalocele1COL18A1 CL E G H807812195ORPHA:1571Knobloch syndromeHP:0040281 - Very frequent177
HP:0002084HP:0002085Occipital encephalocele1COL18A1 CL E G H807812195OMIM:267750Knobloch syndrome 1.177
HP:0002084HP:0002085Occipital encephalocele1CSPP1 CL E G H7984826193OMIM:615636Joubert syndrome 21HP:0040283 - Occasional57
HP:0002084HP:0002085Occipital encephalocele1CSPP1 CL E G H7984826193ORPHA:397715Joubert syndrome with Jeune asphyxiating thoracic dystrophyHP:0040283 - Occasional57
HP:0002084HP:0002085Occipital encephalocele1CYP26B1 CL E G H5660320581OMIM:614416RADIOHUMERAL FUSIONS WITH OTHER SKELETAL AND CRANIOFACIAL ANOMALIES; RHFCA4
HP:0002084HP:0011817Basal encephalocele1DISP1 CL E G H8497619711ORPHA:280195Septopreoptic holoprosencephaly22
HP:0002084HP:0011817Basal encephalocele1DLL1 CL E G H285142908ORPHA:280195Septopreoptic holoprosencephaly3
HP:0002084HP:0007330Frontal encephalocele1ESCO2 CL E G H15757027230OMIM:268300Roberts syndrome.92
HP:0002084HP:0011817Basal encephalocele1FGF8 CL E G H22533686ORPHA:280195Septopreoptic holoprosencephaly17
HP:0002084HP:0002085Occipital encephalocele1FKRP CL E G H7914717997ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional157
HP:0002084HP:0006888Meningoencephalocele1FKRP CL E G H7914717997OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1157
HP:0002084HP:0002085Occipital encephalocele1FKRP CL E G H7914717997OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1.157
HP:0002084HP:0002085Occipital encephalocele1FKTN CL E G H22183622OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1.184
HP:0002084HP:0006888Meningoencephalocele1FKTN CL E G H22183622OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1184
HP:0002084HP:0011817Basal encephalocele1FOXH1 CL E G H89283814ORPHA:280195Septopreoptic holoprosencephaly48
HP:0002084HP:0011817Basal encephalocele1GAS1 CL E G H26194165ORPHA:280195Septopreoptic holoprosencephaly2
HP:0002084HP:0011817Basal encephalocele1GLI2 CL E G H27364318ORPHA:280195Septopreoptic holoprosencephaly173
HP:0002084HP:0002085Occipital encephalocele1GMPPB CL E G H2992522932ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional34
HP:0002084HP:0002085Occipital encephalocele1HOXD13 CL E G H32395136ORPHA:887VACTERL/VATER associationHP:0040283 - Occasional25
HP:0002084HP:0002085Occipital encephalocele1INPP5E CL E G H5662321474ORPHA:1454Joubert syndrome with hepatic defectHP:0040283 - Occasional111
HP:0002084HP:0002085Occipital encephalocele1KIAA0586 CL E G H978619960ORPHA:397715Joubert syndrome with Jeune asphyxiating thoracic dystrophyHP:0040283 - Occasional24
HP:0002084HP:0002085Occipital encephalocele1LAMB1 CL E G H39126486ORPHA:352682Cobblestone lissencephaly without muscular or ocular involvementHP:0040282 - Frequent71
HP:0002084HP:0002085Occipital encephalocele1LAMB1 CL E G H39126486OMIM:615191Lissencephaly 571
HP:0002084HP:0002085Occipital encephalocele1LARGE1 CL E G H92156511OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1.136
HP:0002084HP:0006888Meningoencephalocele1LARGE1 CL E G H92156511OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1136
HP:0002084HP:0002085Occipital encephalocele1MKS1 CL E G H549037121OMIM:249000Meckel syndrome 1127
HP:0002084HP:0002085Occipital encephalocele1MSX2 CL E G H44887392ORPHA:60015Enlarged parietal foraminaHP:0040284 - Very rare45
HP:0002084HP:0011817Basal encephalocele1NODAL CL E G H48387865ORPHA:280195Septopreoptic holoprosencephaly45
HP:0002084HP:0002085Occipital encephalocele1PAK2 CL E G H50628591ORPHA:1571Knobloch syndromeHP:0040281 - Very frequent
HP:0002084HP:0002085Occipital encephalocele1POMGNT1 CL E G H5562419139ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional180
HP:0002084HP:0002085Occipital encephalocele1POMK CL E G H8419726267ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional18
HP:0002084HP:0002085Occipital encephalocele1POMT1 CL E G H105859202ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional213
HP:0002084HP:0002085Occipital encephalocele1POMT1 CL E G H105859202OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1.213
HP:0002084HP:0006888Meningoencephalocele1POMT1 CL E G H105859202OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1213
HP:0002084HP:0002085Occipital encephalocele1POMT2 CL E G H2995419743ORPHA:370959Congenital muscular dystrophy with cerebellar involvementHP:0040283 - Occasional221
HP:0002084HP:0002085Occipital encephalocele1POMT2 CL E G H2995419743OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1.221
HP:0002084HP:0006888Meningoencephalocele1POMT2 CL E G H2995419743OMIM:236670Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1221
HP:0002084HP:0011817Basal encephalocele1PTCH1 CL E G H57279585ORPHA:280195Septopreoptic holoprosencephaly665
HP:0002084HP:0002085Occipital encephalocele1RPGRIP1L CL E G H2332229168ORPHA:1454Joubert syndrome with hepatic defectHP:0040283 - Occasional167
HP:0002084HP:0002085Occipital encephalocele1RPGRIP1L CL E G H2332229168OMIM:611561Meckel syndrome, type 5.167
HP:0002084HP:0002085Occipital encephalocele1SF3B2 CL E G H1099210769OMIM:164210Hemifacial microsomia.2
HP:0002084HP:0011817Basal encephalocele1SHH CL E G H646910848ORPHA:280195Septopreoptic holoprosencephaly67
HP:0002084HP:0011817Basal encephalocele1SIX3 CL E G H649610889ORPHA:280195Septopreoptic holoprosencephaly32
HP:0002084HP:0002085Occipital encephalocele1SMO CL E G H660811119OMIM:241800Hypothalamic hamartomascongenital hypothalamic hamartoma syndrome, included.22
HP:0002084HP:0011817Basal encephalocele1STIL CL E G H649110879ORPHA:280195Septopreoptic holoprosencephaly99
HP:0002084HP:0002085Occipital encephalocele1TCTN2 CL E G H7986725774OMIM:613885Meckel syndrome, type 876
HP:0002084HP:0002085Occipital encephalocele1TCTN3 CL E G H2612324519OMIM:614815Joubert syndrome 1831
HP:0002084HP:0011817Basal encephalocele1TDGF1 CL E G H699711701ORPHA:280195Septopreoptic holoprosencephaly1
HP:0002084HP:0011817Basal encephalocele1TGIF1 CL E G H705011776ORPHA:280195Septopreoptic holoprosencephaly32
HP:0002084HP:0002085Occipital encephalocele1TMEM107 CL E G H8431428128OMIM:617562Meckel syndrome 13.4
HP:0002084HP:0002085Occipital encephalocele1TMEM218 CL E G H21985427344OMIM:619562JOUBERT SYNDROME 39; JBTS39
HP:0002084HP:0002085Occipital encephalocele1TMEM231 CL E G H7958337234OMIM:615397Meckel syndrome, type 11.33
HP:0002084HP:0002085Occipital encephalocele1TMEM67 CL E G H9114728396OMIM:216360Coach syndrome 1.166
HP:0002084HP:0002085Occipital encephalocele1TMEM67 CL E G H9114728396ORPHA:1454Joubert syndrome with hepatic defectHP:0040283 - Occasional166
HP:0002084HP:0002085Occipital encephalocele1TMEM67 CL E G H9114728396OMIM:607361Meckel syndrome 3166
HP:0002084HP:0002085Occipital encephalocele1TMTC3 CL E G H16041826899OMIM:617255Lissencephaly 8HP:0040283 - Occasional5
HP:0002084HP:0002085Occipital encephalocele1TXNDC15 CL E G H7977020652OMIM:6198792
HP:0002084HP:0007330Frontal encephalocele1VSX1 CL E G H3081312723OMIM:614195Craniofacial anomalies and anterior segment dysgenesis syndrome47
HP:0002084HP:0011817Basal encephalocele1ZIC2 CL E G H754612873ORPHA:280195Septopreoptic holoprosencephaly34
HP:0002084HP:0004478Ethmoidal encephalocele2CDON CL E G H5093717104ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional200
HP:0002084HP:0004478Ethmoidal encephalocele2DISP1 CL E G H8497619711ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional22
HP:0002084HP:0004478Ethmoidal encephalocele2DLL1 CL E G H285142908ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional3
HP:0002084HP:0004478Ethmoidal encephalocele2FGF8 CL E G H22533686ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional17
HP:0002084HP:0004478Ethmoidal encephalocele2FOXH1 CL E G H89283814ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional48
HP:0002084HP:0004478Ethmoidal encephalocele2GAS1 CL E G H26194165ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional2
HP:0002084HP:0004478Ethmoidal encephalocele2GLI2 CL E G H27364318ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional173
HP:0002084HP:0004478Ethmoidal encephalocele2NODAL CL E G H48387865ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional45
HP:0002084HP:0004478Ethmoidal encephalocele2PTCH1 CL E G H57279585ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional665
HP:0002084HP:0004478Ethmoidal encephalocele2SHH CL E G H646910848ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional67
HP:0002084HP:0004478Ethmoidal encephalocele2SIX3 CL E G H649610889ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional32
HP:0002084HP:0004478Ethmoidal encephalocele2STIL CL E G H649110879ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional99
HP:0002084HP:0004478Ethmoidal encephalocele2TDGF1 CL E G H699711701ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional1
HP:0002084HP:0004478Ethmoidal encephalocele2TGIF1 CL E G H705011776ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional32
HP:0002084HP:0011818Nasofrontal encephalocele2VSX1 CL E G H3081312723OMIM:614195Craniofacial anomalies and anterior segment dysgenesis syndrome47
HP:0002084HP:0004478Ethmoidal encephalocele2ZIC2 CL E G H754612873ORPHA:280195Septopreoptic holoprosencephalyHP:0040283 - Occasional34


Genes (116) :AHI1 AIPL1 ALX1 ALX3 ALX4 ARHGAP31 ARL13B ARL3 ARMC9 B4GAT1 B9D1 B9D2 C2CD3 CBY1 CC2D2A CDON CEP104 CEP120 CEP290 CEP41 COL18A1 CPLANE1 CRB1 CRPPA CRX CSPP1 CYP26B1 DISP1 DLL1 DLL4 DOCK6 EOGT ESCO2 FGF8 FGFR1 FGFR3 FKRP FKTN FLNA FLNB FOXH1 FRAS1 FREM2 GAS1 GDF6 GLI2 GMPPB GRIP1 GUCY2D HOXD13 HSPG2 HYLS1 IFT140 IMPDH1 INPP5E IQCB1 KATNIP KCNJ13 KIAA0586 LAMB1 LARGE1 LCA5 LRAT MKS1 MSX2 NMNAT1 NODAL NOTCH1 NPHP1 PAK2 PCYT1A PIBF1 POLR1B POLR1C POLR1D POMGNT1 POMK POMT1 POMT2 PTCH1 RBPJ RD3 RDH12 RPE65 RPGRIP1 RPGRIP1L SF3B2 SHH SIX3 SMO SPATA7 STIL SUFU TCOF1 TCTN1 TCTN2 TCTN3 TDGF1 TGIF1 TMEM107 TMEM138 TMEM216 TMEM218 TMEM231 TMEM237 TMEM67 TMTC3 TOGARAM1 TUBB4B TULP1 TXNDC15 USP45 VSX1 ZIC2 ZNF423 ZSWIM6

Diseases (72) :ORPHA:475 ORPHA:220493 ORPHA:65 ORPHA:306542 OMIM:136760 ORPHA:391474 ORPHA:60015 OMIM:613451 ORPHA:228390 OMIM:609597 ORPHA:974 OMIM:100300 OMIM:612291 OMIM:615287 ORPHA:564 OMIM:614209 OMIM:614175 OMIM:615948 OMIM:612285 ORPHA:1454 ORPHA:2318 OMIM:612284 ORPHA:280195 OMIM:616300 OMIM:610188 OMIM:611134 ORPHA:1571 OMIM:267750 OMIM:614643 OMIM:615636 ORPHA:397715 OMIM:614416 OMIM:268300 ORPHA:2117 ORPHA:93274 ORPHA:370959 OMIM:236670 OMIM:253800 ORPHA:90652 OMIM:108720 OMIM:219000 ORPHA:2052 ORPHA:887 ORPHA:1865 ORPHA:352682 OMIM:615191 OMIM:249000 OMIM:168500 ORPHA:220497 OMIM:618458 ORPHA:861 OMIM:613150 OMIM:611560 OMIM:611561 OMIM:164210 OMIM:241800 OMIM:613885 OMIM:614815 OMIM:617562 OMIM:614465 OMIM:608091 OMIM:603194 OMIM:619562 OMIM:615397 OMIM:614424 OMIM:216360 OMIM:607361 OMIM:617255 OMIM:619879 OMIM:614195 OMIM:603671 ORPHA:1827
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.