Human Phenotype Ontology 
Grandparent Node:
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Localized skin lesion (HP:0011355)help
Parent Node:
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Skin nodule (HP:0200036)help
..Starting node
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Subcutaneous nodule (HP:0001482)help
Term ID: 1482
Name: Subcutaneous nodule
Synonym: Firm lump under the skin; Growth of abnormal tissue under the skin; Multiple, subcutaneous nodules; Nodule below the skin; Subcutaneous nodules
Definition: Slightly elevated lesions on or in the skin with a diameter of over 5 mm.
Comments:
Reference: HP:0001482
Genes and Diseases:
 
       Child Nodes:
........expandPeriarticular subcutaneous nodules (HP:0007470) help
........expandSubcutaneous spheroids (HP:0025014) help

 Sister Nodes: 
..expandAcrokeratosis (HP:0200016) help
..expandHyperpigmented nodule (HP:0025529) help
..expandNodular changes affecting the eyelids (HP:0010732) help
..expandOsteoma cutis (HP:0025027) help
..expandUmbilicated nodule (HP:0025103) help
..expandYellow nodule (HP:0025554) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0001482HP:0001482Subcutaneous nodule0ABCC6 CL E G H36857ORPHA:758Pseudoxanthoma elasticumHP:0040283 - Occasional415
HP:0001482HP:0001482Subcutaneous nodule0ACVR1 CL E G H90171ORPHA:337Fibrodysplasia ossificans progressivaHP:0040281 - Very frequent49
HP:0001482HP:0001482Subcutaneous nodule0AKT1 CL E G H207391ORPHA:201Cowden syndromeHP:0040282 - Frequent54
HP:0001482HP:0001482Subcutaneous nodule0AKT1 CL E G H207391ORPHA:744Proteus syndromeHP:0040281 - Very frequent54
HP:0001482HP:0001482Subcutaneous nodule0ANTXR2 CL E G H11842921732OMIM:228600Hyaline fibromatosis syndrome49
HP:0001482HP:0001482Subcutaneous nodule0ANTXR2 CL E G H11842921732ORPHA:2176Infantile systemic hyalinosisHP:0040281 - Very frequent49
HP:0001482HP:0001482Subcutaneous nodule0ANTXR2 CL E G H11842921732ORPHA:2028Juvenile hyaline fibromatosisHP:0040281 - Very frequent49
HP:0001482HP:0001482Subcutaneous nodule0APC CL E G H324583ORPHA:873Desmoid tumorHP:0040281 - Very frequent3179
HP:0001482HP:0001482Subcutaneous nodule0APOE CL E G H348613ORPHA:158029Sea-blue histiocytosisHP:0040281 - Very frequent39
HP:0001482HP:0001482Subcutaneous nodule0ASAH1 CL E G H427735ORPHA:333Farber disease78
HP:0001482HP:0001482Subcutaneous nodule0ASAH1 CL E G H427735OMIM:228000Farber lipogranulomatosis78
HP:0001482HP:0001482Subcutaneous nodule0B2M CL E G H567914OMIM:241600Immunodeficiency 438
HP:0001482HP:0001482Subcutaneous nodule0BRAF CL E G H6731097ORPHA:500Noonan syndrome with multiple lentiginesHP:0040283 - Occasional276
HP:0001482HP:0001482Subcutaneous nodule0BRAF CL E G H6731097ORPHA:840Syringocystadenoma papilliferumHP:0040281 - Very frequent276
HP:0001482HP:0001482Subcutaneous nodule0BTNL2 CL E G H562441142ORPHA:797SarcoidosisHP:0040283 - Occasional1
HP:0001482HP:0001482Subcutaneous nodule0C4A CL E G H7201323ORPHA:117Behçet diseaseHP:0040281 - Very frequent1
HP:0001482HP:0001482Subcutaneous nodule0CCR1 CL E G H12301602ORPHA:117Behçet diseaseHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0CDK4 CL E G H10191773ORPHA:99971Well-differentiated liposarcomaHP:0040281 - Very frequent145
HP:0001482HP:0001482Subcutaneous nodule0COL1A1 CL E G H12772197ORPHA:287Classical Ehlers-Danlos syndrome373
HP:0001482HP:0001482Subcutaneous nodule0COL1A1 CL E G H12772197ORPHA:31112Dermatofibrosarcoma protuberansHP:0040281 - Very frequent373
HP:0001482HP:0001482Subcutaneous nodule0COL3A1 CL E G H12812201ORPHA:286Vascular Ehlers-Danlos syndromeHP:0040283 - Occasional749
HP:0001482HP:0001482Subcutaneous nodule0COL5A1 CL E G H12892209ORPHA:287Classical Ehlers-Danlos syndrome660
HP:0001482HP:0001482Subcutaneous nodule0COL5A1 CL E G H12892209OMIM:130000Ehlers-danlos syndrome, type I660
HP:0001482HP:0001482Subcutaneous nodule0COL5A2 CL E G H12902210ORPHA:287Classical Ehlers-Danlos syndrome325
HP:0001482HP:0001482Subcutaneous nodule0COL5A2 CL E G H12902210OMIM:130010Ehlers-Danlos syndrome, classic type, 2325
HP:0001482HP:0001482Subcutaneous nodule0COL7A1 CL E G H12942214ORPHA:89843Dystrophic epidermolysis bullosa pruriginosaHP:0040283 - Occasional263
HP:0001482HP:0001482Subcutaneous nodule0CTNNB1 CL E G H14992514ORPHA:873Desmoid tumorHP:0040281 - Very frequent88
HP:0001482HP:0001482Subcutaneous nodule0CTNNB1 CL E G H14992514ORPHA:91414Pilomatrixoma88
HP:0001482HP:0001482Subcutaneous nodule0CYLD CL E G H15402584ORPHA:211Familial cylindromatosisHP:0040281 - Very frequent126
HP:0001482HP:0001482Subcutaneous nodule0CYLD CL E G H15402584ORPHA:867Familial multiple trichoepitheliomaHP:0040281 - Very frequent126
HP:0001482HP:0001482Subcutaneous nodule0DACT1 CL E G H5133917748ORPHA:857Townes-Brocks syndromeHP:0040282 - Frequent2
HP:0001482HP:0001482Subcutaneous nodule0DDIT3 CL E G H16492726ORPHA:99967Myxoid/round cell liposarcomaHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0ECM1 CL E G H18933153ORPHA:530Lipoid proteinosisHP:0040281 - Very frequent14
HP:0001482HP:0001482Subcutaneous nodule0ENPP1 CL E G H51673356ORPHA:758Pseudoxanthoma elasticumHP:0040283 - Occasional151
HP:0001482HP:0001482Subcutaneous nodule0ERAP1 CL E G H5175218173ORPHA:117Behçet diseaseHP:0040281 - Very frequent1
HP:0001482HP:0001482Subcutaneous nodule0FAS CL E G H35511920ORPHA:117Behçet diseaseHP:0040281 - Very frequent59
HP:0001482HP:0001482Subcutaneous nodule0FBN1 CL E G H22003603ORPHA:2833Stiff skin syndromeHP:0040283 - Occasional1361
HP:0001482HP:0001482Subcutaneous nodule0FERMT3 CL E G H8370623151OMIM:612840Leukocyte adhesion deficiency, type III23
HP:0001482HP:0001482Subcutaneous nodule0FGFR1 CL E G H22603688ORPHA:2396Encephalocraniocutaneous lipomatosisHP:0040281 - Very frequent172
HP:0001482HP:0001482Subcutaneous nodule0FGFR2 CL E G H22633689ORPHA:1555Cutis gyrata-acanthosis nigricans-craniosynostosis syndromeHP:0040281 - Very frequent175
HP:0001482HP:0001482Subcutaneous nodule0FUS CL E G H25214010ORPHA:99967Myxoid/round cell liposarcomaHP:0040281 - Very frequent105
HP:0001482HP:0001482Subcutaneous nodule0GLA CL E G H27174296ORPHA:324Fabry diseaseHP:0040281 - Very frequent291
HP:0001482HP:0001482Subcutaneous nodule0GLS CL E G H27444331OMIM:618339Infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development
HP:0001482HP:0001482Subcutaneous nodule0GNAS CL E G H27784392ORPHA:2762Progressive osseous heteroplasiaHP:0040281 - Very frequent101
HP:0001482HP:0001482Subcutaneous nodule0HLA-B CL E G H31064932ORPHA:117Behçet diseaseHP:0040281 - Very frequent4
HP:0001482HP:0001482Subcutaneous nodule0HLA-B CL E G H31064932ORPHA:3287Takayasu arteritisHP:0040281 - Very frequent4
HP:0001482HP:0001482Subcutaneous nodule0HLA-DRB1 CL E G H31234948ORPHA:797SarcoidosisHP:0040283 - Occasional2
HP:0001482HP:0001482Subcutaneous nodule0HMGA2 CL E G H80915009ORPHA:9406312q14 microdeletion syndromeHP:0040283 - Occasional2
HP:0001482HP:0001482Subcutaneous nodule0HMGA2 CL E G H80915009ORPHA:99971Well-differentiated liposarcomaHP:0040281 - Very frequent2
HP:0001482HP:0001482Subcutaneous nodule0IARS2 CL E G H5569929685ORPHA:436174Cataract-growth hormone deficiency-sensory neuropathy-sensorineural hearing loss-skeletal dysplasia syndrome25
HP:0001482HP:0001482Subcutaneous nodule0IDH1 CL E G H34175382ORPHA:163634Maffucci syndromeHP:0040282 - Frequent15
HP:0001482HP:0001482Subcutaneous nodule0IDH1 CL E G H34175382ORPHA:296Ollier diseaseHP:0040282 - Frequent15
HP:0001482HP:0001482Subcutaneous nodule0IDH2 CL E G H34185383ORPHA:163634Maffucci syndromeHP:0040282 - Frequent29
HP:0001482HP:0001482Subcutaneous nodule0IDH2 CL E G H34185383ORPHA:296Ollier diseaseHP:0040282 - Frequent29
HP:0001482HP:0001482Subcutaneous nodule0IFNG CL E G H34585438OMIM:613254Tuberous sclerosis-2.23
HP:0001482HP:0001482Subcutaneous nodule0IFNGR1 CL E G H34595439ORPHA:117Behçet diseaseHP:0040281 - Very frequent60
HP:0001482HP:0001482Subcutaneous nodule0IL10 CL E G H35865962ORPHA:117Behçet diseaseHP:0040281 - Very frequent2
HP:0001482HP:0001482Subcutaneous nodule0IL12A CL E G H35925969ORPHA:117Behçet diseaseHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0IL12A-AS1 CL E G H10192837649094ORPHA:117Behçet diseaseHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0IL12B CL E G H35935970ORPHA:3287Takayasu arteritisHP:0040281 - Very frequent31
HP:0001482HP:0001482Subcutaneous nodule0IL23R CL E G H14923319100ORPHA:117Behçet diseaseHP:0040281 - Very frequent1
HP:0001482HP:0001482Subcutaneous nodule0INSR CL E G H36436091ORPHA:2297Insulin-resistance syndrome type AHP:0040281 - Very frequent229
HP:0001482HP:0001482Subcutaneous nodule0KIF11 CL E G H38326388ORPHA:2526Microcephaly-lymphedema-chorioretinopathy syndromeHP:0040283 - Occasional46
HP:0001482HP:0001482Subcutaneous nodule0KLLN CL E G H10014474837212ORPHA:201Cowden syndromeHP:0040282 - Frequent1
HP:0001482HP:0001482Subcutaneous nodule0KLRC4 CL E G H83026377ORPHA:117Behçet diseaseHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0KRAS CL E G H38456407ORPHA:2396Encephalocraniocutaneous lipomatosisHP:0040281 - Very frequent196
HP:0001482HP:0001482Subcutaneous nodule0LEMD3 CL E G H2359228887ORPHA:9406312q14 microdeletion syndromeHP:0040283 - Occasional68
HP:0001482HP:0001482Subcutaneous nodule0LEMD3 CL E G H2359228887ORPHA:1306Buschke-Ollendorff syndromeHP:0040281 - Very frequent68
HP:0001482HP:0001482Subcutaneous nodule0LEMD3 CL E G H2359228887ORPHA:1879Melorheostosis with osteopoikilosisHP:0040283 - Occasional68
HP:0001482HP:0001482Subcutaneous nodule0MC1R CL E G H41576929ORPHA:626Large congenital melanocytic nevusHP:0040283 - Occasional124
HP:0001482HP:0001482Subcutaneous nodule0MDM2 CL E G H41936973ORPHA:99971Well-differentiated liposarcomaHP:0040281 - Very frequent1
HP:0001482HP:0001482Subcutaneous nodule0MEFV CL E G H42106998ORPHA:117Behçet diseaseHP:0040281 - Very frequent281
HP:0001482HP:0001482Subcutaneous nodule0MLX CL E G H694511645ORPHA:3287Takayasu arteritisHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0MMP14 CL E G H43237160ORPHA:371428Multicentric osteolysis-nodulosis-arthropathy spectrumHP:0040282 - Frequent2
HP:0001482HP:0001482Subcutaneous nodule0MMP2 CL E G H43137166OMIM:259600Multicentric osteolysis, nodulosis, and arthropathy64
HP:0001482HP:0001482Subcutaneous nodule0MMP2 CL E G H43137166ORPHA:371428Multicentric osteolysis-nodulosis-arthropathy spectrumHP:0040282 - Frequent64
HP:0001482HP:0001482Subcutaneous nodule0MYSM1 CL E G H11480329401ORPHA:508542Congenital progressive bone marrow failure-B-cell immunodeficiency-skeletal dysplasia syndromeHP:0040283 - Occasional
HP:0001482HP:0001482Subcutaneous nodule0NAGA CL E G H46687631ORPHA:79280Alpha-N-acetylgalactosaminidase deficiency type 2HP:0040281 - Very frequent47
HP:0001482HP:0001482Subcutaneous nodule0NOTCH3 CL E G H48547883ORPHA:2591Infantile myofibromatosisHP:0040281 - Very frequent144
HP:0001482HP:0001482Subcutaneous nodule0NRAS CL E G H48937989ORPHA:626Large congenital melanocytic nevusHP:0040283 - Occasional102
HP:0001482HP:0001482Subcutaneous nodule0OCRL CL E G H49528108OMIM:309000Lowe syndrome.88
HP:0001482HP:0001482Subcutaneous nodule0PDGFB CL E G H51558800ORPHA:31112Dermatofibrosarcoma protuberansHP:0040281 - Very frequent9
HP:0001482HP:0001482Subcutaneous nodule0PDGFRB CL E G H51598804ORPHA:2591Infantile myofibromatosisHP:0040281 - Very frequent28
HP:0001482HP:0001482Subcutaneous nodule0PIK3CA CL E G H52908975ORPHA:201Cowden syndromeHP:0040282 - Frequent162
HP:0001482HP:0001482Subcutaneous nodule0POMP CL E G H5137120330OMIM:618048Proteasome-Associated autoinflammatory syndrome 22
HP:0001482HP:0001482Subcutaneous nodule0PORCN CL E G H6484017652ORPHA:2092Focal dermal hypoplasiaHP:0040282 - Frequent20
HP:0001482HP:0001482Subcutaneous nodule0PTEN CL E G H57289588ORPHA:109Bannayan-Riley-Ruvalcaba syndromeHP:0040282 - Frequent948
HP:0001482HP:0001482Subcutaneous nodule0PTEN CL E G H57289588ORPHA:201Cowden syndromeHP:0040282 - Frequent948
HP:0001482HP:0001482Subcutaneous nodule0PTEN CL E G H57289588ORPHA:744Proteus syndromeHP:0040281 - Very frequent948
HP:0001482HP:0001482Subcutaneous nodule0PTEN CL E G H57289588ORPHA:137608Segmental outgrowth-lipomatosis-arteriovenous malformation-epidermal nevus syndromeHP:0040281 - Very frequent948
HP:0001482HP:0001482Subcutaneous nodule0PTH1R CL E G H57459608ORPHA:296Ollier diseaseHP:0040282 - Frequent58
HP:0001482HP:0001482Subcutaneous nodule0PTPN11 CL E G H57819644ORPHA:500Noonan syndrome with multiple lentiginesHP:0040283 - Occasional291
HP:0001482HP:0001482Subcutaneous nodule0RAF1 CL E G H58949829ORPHA:500Noonan syndrome with multiple lentiginesHP:0040283 - Occasional212
HP:0001482HP:0001482Subcutaneous nodule0SALL1 CL E G H629910524ORPHA:857Townes-Brocks syndromeHP:0040282 - Frequent124
HP:0001482HP:0001482Subcutaneous nodule0SDHB CL E G H639010681ORPHA:201Cowden syndromeHP:0040282 - Frequent237
HP:0001482HP:0001482Subcutaneous nodule0SDHC CL E G H639110682ORPHA:201Cowden syndromeHP:0040282 - Frequent147
HP:0001482HP:0001482Subcutaneous nodule0SDHD CL E G H639210683ORPHA:201Cowden syndromeHP:0040282 - Frequent129
HP:0001482HP:0001482Subcutaneous nodule0SEC23B CL E G H1048310702ORPHA:201Cowden syndromeHP:0040282 - Frequent60
HP:0001482HP:0001482Subcutaneous nodule0STAT4 CL E G H677511365ORPHA:117Behçet diseaseHP:0040281 - Very frequent2
HP:0001482HP:0001482Subcutaneous nodule0TEK CL E G H701011724ORPHA:1059Blue rubber bleb nevusHP:0040282 - Frequent78
HP:0001482HP:0001482Subcutaneous nodule0TLR4 CL E G H709911850ORPHA:117Behçet diseaseHP:0040281 - Very frequent3
HP:0001482HP:0001482Subcutaneous nodule0TNFRSF11A CL E G H879211908ORPHA:2801Juvenile Paget diseaseHP:0040283 - Occasional72
HP:0001482HP:0001482Subcutaneous nodule0TNFRSF11B CL E G H498211909ORPHA:2801Juvenile Paget diseaseHP:0040283 - Occasional44
HP:0001482HP:0001482Subcutaneous nodule0TSC1 CL E G H724812362OMIM:191100Tuberous sclerosis-1.1090
HP:0001482HP:0001482Subcutaneous nodule0TSC2 CL E G H724912363OMIM:613254Tuberous sclerosis-2.2738
HP:0001482HP:0001482Subcutaneous nodule0UBAC2 CL E G H33786720486ORPHA:117Behçet diseaseHP:0040281 - Very frequent
HP:0001482HP:0001482Subcutaneous nodule0USF3 CL E G H20571730494ORPHA:201Cowden syndromeHP:0040282 - Frequent1
HP:0001482HP:0007470Periarticular subcutaneous nodules1ASAH1 CL E G H427735ORPHA:333Farber diseaseHP:0040281 - Very frequent78
HP:0001482HP:0007470Periarticular subcutaneous nodules1ASAH1 CL E G H427735OMIM:228000Farber lipogranulomatosis.78
HP:0001482HP:0025014Subcutaneous spheroids1COL1A1 CL E G H12772197ORPHA:287Classical Ehlers-Danlos syndromeHP:0040283 - Occasional373
HP:0001482HP:0025014Subcutaneous spheroids1COL5A1 CL E G H12892209ORPHA:287Classical Ehlers-Danlos syndromeHP:0040283 - Occasional660
HP:0001482HP:0025014Subcutaneous spheroids1COL5A1 CL E G H12892209OMIM:130000Ehlers-danlos syndrome, type I660
HP:0001482HP:0025014Subcutaneous spheroids1COL5A2 CL E G H12902210ORPHA:287Classical Ehlers-Danlos syndromeHP:0040283 - Occasional325
HP:0001482HP:0025014Subcutaneous spheroids1COL5A2 CL E G H12902210OMIM:130010Ehlers-Danlos syndrome, classic type, 2325
HP:0001482HP:0007470Periarticular subcutaneous nodules1IARS2 CL E G H5569929685ORPHA:436174Cataract-growth hormone deficiency-sensory neuropathy-sensorineural hearing loss-skeletal dysplasia syndromeHP:0040281 - Very frequent25


Genes (87) :ABCC6 ACVR1 AKT1 ANTXR2 APC APOE ASAH1 B2M BRAF BTNL2 C4A CCR1 CDK4 COL1A1 COL3A1 COL5A1 COL5A2 COL7A1 CTNNB1 CYLD DACT1 DDIT3 ECM1 ENPP1 ERAP1 FAS FBN1 FERMT3 FGFR1 FGFR2 FUS GLA GLS GNAS HLA-B HLA-DRB1 HMGA2 IARS2 IDH1 IDH2 IFNG IFNGR1 IL10 IL12A IL12A-AS1 IL12B IL23R INSR KIF11 KLLN KLRC4 KRAS LEMD3 MC1R MDM2 MEFV MLX MMP14 MMP2 MYSM1 NAGA NOTCH3 NRAS OCRL PDGFB PDGFRB PIK3CA POMP PORCN PTEN PTH1R PTPN11 RAF1 SALL1 SDHB SDHC SDHD SEC23B STAT4 TEK TLR4 TNFRSF11A TNFRSF11B TSC1 TSC2 UBAC2 USF3

Diseases (60) :ORPHA:758 ORPHA:337 ORPHA:201 ORPHA:744 OMIM:228600 ORPHA:2176 ORPHA:2028 ORPHA:873 ORPHA:158029 ORPHA:333 OMIM:228000 OMIM:241600 ORPHA:500 ORPHA:840 ORPHA:797 ORPHA:117 ORPHA:99971 ORPHA:287 ORPHA:31112 ORPHA:286 OMIM:130000 OMIM:130010 ORPHA:89843 ORPHA:91414 ORPHA:211 ORPHA:867 ORPHA:857 ORPHA:99967 ORPHA:530 ORPHA:2833 OMIM:612840 ORPHA:2396 ORPHA:1555 ORPHA:324 OMIM:618339 ORPHA:2762 ORPHA:3287 ORPHA:94063 ORPHA:436174 ORPHA:163634 ORPHA:296 OMIM:613254 ORPHA:2297 ORPHA:2526 ORPHA:1306 ORPHA:1879 ORPHA:626 ORPHA:371428 OMIM:259600 ORPHA:508542 ORPHA:79280 ORPHA:2591 OMIM:309000 OMIM:618048 ORPHA:2092 ORPHA:109 ORPHA:137608 ORPHA:1059 ORPHA:2801 OMIM:191100
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.