Human Phenotype Ontology 
Grandparent Node:
expand
Abnormal nervous system physiology (HP:0012638)help
Parent Node:
expand
Neurodevelopmental abnormality (HP:0012759)help
..Starting node
..expand
Specific learning disability (HP:0001328)help
Term ID: 1328
Name: Specific learning disability
Synonym:
Definition: Impairment of certain skills such as reading or writing, coordination, self-control, or attention that interfere with the ability to learn. The impairment is not related to a global deficiency of intelligence.
Comments:
Reference: HP:0001328
Genes and Diseases:
 
       Child Nodes:
........expandDyscalculia (HP:0002442) help
........expandDyslexia (HP:0010522) help
........expandImpaired visuospatial constructive cognition (HP:0010794) help

 Sister Nodes: 
..expandDevelopmental regression (HP:0002376) help
..expandDevelopmental stagnation (HP:0007281) help
..expandIntellectual disability (HP:0001249) help
..expandNeurodevelopmental delay (HP:0012758) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0001328HP:0001328Specific learning disability0ABCD1 CL E G H21561ORPHA:139396X-linked cerebral adrenoleukodystrophyHP:0040282 - Frequent135
HP:0001328HP:0001328Specific learning disability0ACTB CL E G H60132ORPHA:2995Baraitser-Winter cerebrofrontofacial syndromeHP:0040281 - Very frequent72
HP:0001328HP:0001328Specific learning disability0ACTG1 CL E G H71144ORPHA:2995Baraitser-Winter cerebrofrontofacial syndromeHP:0040281 - Very frequent123
HP:0001328HP:0001328Specific learning disability0ADGRG1 CL E G H92894512ORPHA:98889Bilateral perisylvian polymicrogyriaHP:0040282 - Frequent88
HP:0001328HP:0001328Specific learning disability0AFF2 CL E G H23343776ORPHA:100973FRAXE intellectual disabilityHP:0040282 - Frequent59
HP:0001328HP:0001328Specific learning disability0ALDH18A1 CL E G H58329722OMIM:601162Spastic paraplegia 9A, autosomal dominant.89
HP:0001328HP:0001328Specific learning disability0ALDOA CL E G H226414ORPHA:57Glycogen storage disease due to aldolase A deficiencyHP:0040283 - Occasional50
HP:0001328HP:0001328Specific learning disability0ALMS1 CL E G H7840428ORPHA:64Alström syndromeHP:0040282 - Frequent404
HP:0001328HP:0001328Specific learning disability0AMACR CL E G H23600451ORPHA:79095Congenital bile acid synthesis defect type 444
HP:0001328HP:0001328Specific learning disability0AMER1 CL E G H13928526837ORPHA:2780Osteopathia striata-cranial sclerosis syndromeHP:0040283 - Occasional34
HP:0001328HP:0001328Specific learning disability0APC CL E G H324583ORPHA:261584Familial adenomatous polyposis due to 5q22.2 microdeletion3179
HP:0001328HP:0001328Specific learning disability0APC2 CL E G H1029724036ORPHA:821Sotos syndrome1
HP:0001328HP:0001328Specific learning disability0ARL6 CL E G H8410013210OMIM:209900Bardet-Biedl syndrome 129
HP:0001328HP:0001328Specific learning disability0ARVCF CL E G H421728ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0ARX CL E G H17030218060OMIM:300215Lissencephaly, X-linked, 2.166
HP:0001328HP:0001328Specific learning disability0ASPA CL E G H443756ORPHA:314918Mild Canavan diseaseHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0ATP7A CL E G H538869ORPHA:198Occipital horn syndromeHP:0040281 - Very frequent192
HP:0001328HP:0001328Specific learning disability0AUTS2 CL E G H2605314262ORPHA:352490Autism spectrum disorder due to AUTS2 deficiencyHP:0040282 - Frequent61
HP:0001328HP:0001328Specific learning disability0B3GALNT2 CL E G H14878928596ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent43
HP:0001328HP:0001328Specific learning disability0B4GAT1 CL E G H1104115685ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent17
HP:0001328HP:0001328Specific learning disability0BBS1 CL E G H582966OMIM:209900Bardet-Biedl syndrome 1114
HP:0001328HP:0001328Specific learning disability0BLM CL E G H6411058OMIM:210900Bloom syndrome.314
HP:0001328HP:0001328Specific learning disability0BPTF CL E G H21863581ORPHA:52996217q24.2 microdeletion syndrome2
HP:0001328HP:0001328Specific learning disability0C9ORF72 CL E G H20322828337OMIM:105550Amyotrophic lateral sclerosis and/or frontotemporal dementia 156
HP:0001328HP:0001328Specific learning disability0C9ORF72 CL E G H20322828337ORPHA:275864Behavioral variant of frontotemporal dementia56
HP:0001328HP:0001328Specific learning disability0C9ORF72 CL E G H20322828337ORPHA:275872Frontotemporal dementia with motor neuron disease56
HP:0001328HP:0001328Specific learning disability0C9ORF72 CL E G H20322828337ORPHA:100069Semantic dementia56
HP:0001328HP:0001328Specific learning disability0CA2 CL E G H7601373ORPHA:2785Osteopetrosis with renal tubular acidosis29
HP:0001328HP:0001328Specific learning disability0CACNA1A CL E G H7731388OMIM:141500Migraine, familial hemiplegic, 1449
HP:0001328HP:0001328Specific learning disability0CACNA1H CL E G H89121395ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional75
HP:0001328HP:0001328Specific learning disability0CCDC28B CL E G H7914028163OMIM:209900Bardet-Biedl syndrome 14
HP:0001328HP:0001328Specific learning disability0CDC45 CL E G H83181739ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional9
HP:0001328HP:0001328Specific learning disability0CDC6 CL E G H9901744ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional31
HP:0001328HP:0001328Specific learning disability0CDON CL E G H5093717104ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent200
HP:0001328HP:0001328Specific learning disability0CDON CL E G H5093717104ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent200
HP:0001328HP:0001328Specific learning disability0CDON CL E G H5093717104ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent200
HP:0001328HP:0001328Specific learning disability0CDON CL E G H5093717104ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent200
HP:0001328HP:0001328Specific learning disability0CDON CL E G H5093717104ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent200
HP:0001328HP:0001328Specific learning disability0CDT1 CL E G H8162024576ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional50
HP:0001328HP:0001328Specific learning disability0CHCHD10 CL E G H40091615559ORPHA:275872Frontotemporal dementia with motor neuron disease11
HP:0001328HP:0001328Specific learning disability0CHMP2B CL E G H2597824537ORPHA:275864Behavioral variant of frontotemporal dementia42
HP:0001328HP:0001328Specific learning disability0CHMP2B CL E G H2597824537OMIM:600795Frontotemporal dementia and/or amytrophic lateral sclerosis 742
HP:0001328HP:0001328Specific learning disability0CHMP2B CL E G H2597824537ORPHA:100069Semantic dementia42
HP:0001328HP:0001328Specific learning disability0CHRNA7 CL E G H11391960OMIM:612001Chromosome 15q13.3 microdeletion syndrome52
HP:0001328HP:0001328Specific learning disability0CHSY1 CL E G H2285617198ORPHA:363417Temtamy preaxial brachydactyly syndromeHP:0040283 - Occasional16
HP:0001328HP:0001328Specific learning disability0CKAP2L CL E G H15046826877ORPHA:3255Filippi syndromeHP:0040281 - Very frequent7
HP:0001328HP:0001328Specific learning disability0CLTCL1 CL E G H82182093ORPHA:453510Congenital insensitivity to pain with severe intellectual disabilityHP:0040282 - Frequent6
HP:0001328HP:0001328Specific learning disability0CNKSR2 CL E G H2286619701OMIM:301008MENTAL RETARDATION, X-LINKED, SYNDROMIC, HOUGE TYPE; MRXSHG18
HP:0001328HP:0001328Specific learning disability0COL4A1 CL E G H12822202ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent193
HP:0001328HP:0001328Specific learning disability0COMT CL E G H13122228ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent6
HP:0001328HP:0001328Specific learning disability0COQ2 CL E G H2723525223OMIM:607426Coenzyme Q10 deficiency, primary, 1.54
HP:0001328HP:0001328Specific learning disability0COX1 CL E G H45127419ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0COX2 CL E G H45137421ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0COX3 CL E G H45147422ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0COX7B CL E G H13492291ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional6
HP:0001328HP:0001328Specific learning disability0CRPPA CL E G H72992037276ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent
HP:0001328HP:0001328Specific learning disability0CYLD CL E G H15402584OMIM:619132FRONTOTEMPORAL DEMENTIA AND/OR AMYOTROPHIC LATERAL SCLEROSIS 8; FTDALS8126
HP:0001328HP:0001328Specific learning disability0CYP27A1 CL E G H15932605ORPHA:909Cerebrotendinous xanthomatosisHP:0040282 - Frequent114
HP:0001328HP:0001328Specific learning disability0DAG1 CL E G H16052666ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent108
HP:0001328HP:0001328Specific learning disability0DARS2 CL E G H5515725538ORPHA:137898Leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndromeHP:0040283 - Occasional60
HP:0001328HP:0001328Specific learning disability0DCC CL E G H16302701ORPHA:238722Familial congenital mirror movementsHP:0040283 - Occasional36
HP:0001328HP:0001328Specific learning disability0DGCR2 CL E G H99932845OMIM:192430Velocardiofacial syndrome.
HP:0001328HP:0001328Specific learning disability0DGCR6 CL E G H82142846OMIM:192430Velocardiofacial syndrome.
HP:0001328HP:0001328Specific learning disability0DGCR8 CL E G H544872847OMIM:192430Velocardiofacial syndrome.
HP:0001328HP:0001328Specific learning disability0DIS3L2 CL E G H12956328648ORPHA:2849Perlman syndromeHP:0040281 - Very frequent164
HP:0001328HP:0001328Specific learning disability0DISP1 CL E G H8497619711ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent22
HP:0001328HP:0001328Specific learning disability0DISP1 CL E G H8497619711ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent22
HP:0001328HP:0001328Specific learning disability0DISP1 CL E G H8497619711ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent22
HP:0001328HP:0001328Specific learning disability0DISP1 CL E G H8497619711ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent22
HP:0001328HP:0001328Specific learning disability0DISP1 CL E G H8497619711ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent22
HP:0001328HP:0001328Specific learning disability0DLL1 CL E G H285142908ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0DLL1 CL E G H285142908ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0DLL1 CL E G H285142908ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0DLL1 CL E G H285142908ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0DLL1 CL E G H285142908ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0DMD CL E G H17562928ORPHA:98896Duchenne muscular dystrophyHP:0040281 - Very frequent1496
HP:0001328HP:0001328Specific learning disability0DNAAF4 CL E G H16158221493OMIM:127700Dyslexia, susceptibility to, 127
HP:0001328HP:0001328Specific learning disability0DNAJC21 CL E G H13421827030OMIM:260400Shwachman-Diamond syndrome 1.5
HP:0001328HP:0001328Specific learning disability0DNAL4 CL E G H101262955ORPHA:238722Familial congenital mirror movementsHP:0040283 - Occasional2
HP:0001328HP:0001328Specific learning disability0DPYD CL E G H18063012ORPHA:1675Dihydropyrimidine dehydrogenase deficiencyHP:0040282 - Frequent144
HP:0001328HP:0001328Specific learning disability0DVL1 CL E G H18553084ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional14
HP:0001328HP:0001328Specific learning disability0DVL3 CL E G H18573087ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional5
HP:0001328HP:0001328Specific learning disability0EHMT1 CL E G H7981324650ORPHA:96147Kleefstra syndrome due to 9q34 microdeletionHP:0040281 - Very frequent223
HP:0001328HP:0001328Specific learning disability0ELN CL E G H20063327OMIM:194050Williams-Beuren syndrome172
HP:0001328HP:0001328Specific learning disability0ESS2 CL E G H822016817OMIM:192430Velocardiofacial syndrome.
HP:0001328HP:0001328Specific learning disability0EXTL3 CL E G H21373518ORPHA:508533Skeletal dysplasia-T-cell immunodeficiency-developmental delay syndromeHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0FANCF CL E G H21883587OMIM:603467FANCONI ANEMIA, COMPLEMENTATION GROUP F; FANCF87
HP:0001328HP:0001328Specific learning disability0FARSB CL E G H1005617800OMIM:613658Rajab interstitial lung disease with brain calcifications
HP:0001328HP:0001328Specific learning disability0FBXW7 CL E G H5529416712OMIM:62001222
HP:0001328HP:0001328Specific learning disability0FGF8 CL E G H22533686ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent17
HP:0001328HP:0001328Specific learning disability0FGF8 CL E G H22533686ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent17
HP:0001328HP:0001328Specific learning disability0FGF8 CL E G H22533686ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent17
HP:0001328HP:0001328Specific learning disability0FGF8 CL E G H22533686ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent17
HP:0001328HP:0001328Specific learning disability0FGF8 CL E G H22533686ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent17
HP:0001328HP:0001328Specific learning disability0FGFR1 CL E G H22603688ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent172
HP:0001328HP:0001328Specific learning disability0FGFR1 CL E G H22603688ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent172
HP:0001328HP:0001328Specific learning disability0FIBP CL E G H91583705ORPHA:500095Tall stature-intellectual disability-renal anomalies syndromeHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0FKRP CL E G H7914717997ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent157
HP:0001328HP:0001328Specific learning disability0FKTN CL E G H22183622ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent184
HP:0001328HP:0001328Specific learning disability0FLT4 CL E G H23243767ORPHA:79452Milroy diseaseHP:0040283 - Occasional90
HP:0001328HP:0001328Specific learning disability0FMR1 CL E G H23323775ORPHA:449291Symptomatic form of fragile X syndrome in female carriersHP:0040282 - Frequent30
HP:0001328HP:0001328Specific learning disability0FOXH1 CL E G H89283814ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0FOXH1 CL E G H89283814ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0FOXH1 CL E G H89283814ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0FOXH1 CL E G H89283814ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0FOXH1 CL E G H89283814ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent48
HP:0001328HP:0001328Specific learning disability0FOXP2 CL E G H9398613875ORPHA:209908Childhood apraxia of speechHP:0040282 - Frequent143
HP:0001328HP:0001328Specific learning disability0FRMD5 CL E G H8497828214OMIM:620094
HP:0001328HP:0001328Specific learning disability0FUS CL E G H25214010ORPHA:275872Frontotemporal dementia with motor neuron disease105
HP:0001328HP:0001328Specific learning disability0FZD2 CL E G H25354040ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional
HP:0001328HP:0001328Specific learning disability0GABRA1 CL E G H25544075ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional134
HP:0001328HP:0001328Specific learning disability0GABRB3 CL E G H25624083ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional57
HP:0001328HP:0001328Specific learning disability0GABRG2 CL E G H25664087ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional139
HP:0001328HP:0001328Specific learning disability0GABRG2 CL E G H25664087ORPHA:1945Rolandic epilepsyHP:0040283 - Occasional139
HP:0001328HP:0001328Specific learning disability0GALT CL E G H25924135ORPHA:79239Classic galactosemiaHP:0040282 - Frequent351
HP:0001328HP:0001328Specific learning disability0GAS1 CL E G H26194165ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0GAS1 CL E G H26194165ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0GAS1 CL E G H26194165ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0GAS1 CL E G H26194165ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0GAS1 CL E G H26194165ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0GCLC CL E G H27294311ORPHA:33574Glutamate-cysteine ligase deficiency2
HP:0001328HP:0001328Specific learning disability0GDI1 CL E G H26644226OMIM:300849MENTAL RETARDATION, X-LINKED 41; MRX4120
HP:0001328HP:0001328Specific learning disability0GJC2 CL E G H5716517494ORPHA:79452Milroy diseaseHP:0040283 - Occasional37
HP:0001328HP:0001328Specific learning disability0GLI2 CL E G H27364318ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent173
HP:0001328HP:0001328Specific learning disability0GLI2 CL E G H27364318ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent173
HP:0001328HP:0001328Specific learning disability0GLI2 CL E G H27364318ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent173
HP:0001328HP:0001328Specific learning disability0GLI2 CL E G H27364318ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent173
HP:0001328HP:0001328Specific learning disability0GLI2 CL E G H27364318ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent173
HP:0001328HP:0001328Specific learning disability0GLUD1 CL E G H27464335ORPHA:35878Hyperinsulinism-hyperammonemia syndromeHP:0040282 - Frequent56
HP:0001328HP:0001328Specific learning disability0GMNN CL E G H5105317493ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional3
HP:0001328HP:0001328Specific learning disability0GNPTAB CL E G H7915829670OMIM:252600Mucolipidosis III alpha/beta.240
HP:0001328HP:0001328Specific learning disability0GP1BB CL E G H28124440ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent8
HP:0001328HP:0001328Specific learning disability0GRB10 CL E G H28874564ORPHA:96182Silver-Russell syndrome due to maternal uniparental disomy of chromosome 7HP:0040283 - Occasional
HP:0001328HP:0001328Specific learning disability0GRIA3 CL E G H28924573ORPHA:364028X-linked intellectual disability due to GRIA3 mutationsHP:0040282 - Frequent30
HP:0001328HP:0001328Specific learning disability0GRIN2A CL E G H29034585ORPHA:289266Early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutationHP:0040282 - Frequent434
HP:0001328HP:0001328Specific learning disability0GRIN2A CL E G H29034585ORPHA:1945Rolandic epilepsyHP:0040283 - Occasional434
HP:0001328HP:0001328Specific learning disability0GRIN2A CL E G H29034585ORPHA:163721Rolandic epilepsy-speech dyspraxia syndromeHP:0040283 - Occasional434
HP:0001328HP:0001328Specific learning disability0GRN CL E G H28964601ORPHA:275864Behavioral variant of frontotemporal dementia126
HP:0001328HP:0001328Specific learning disability0GRN CL E G H28964601ORPHA:100069Semantic dementia126
HP:0001328HP:0001328Specific learning disability0H19 CL E G H2831204713ORPHA:231144Silver-Russell syndrome due to 11p15 microduplicationHP:0040283 - Occasional4
HP:0001328HP:0001328Specific learning disability0HAL CL E G H30344806ORPHA:2157HistidinemiaHP:0040284 - Very rare73
HP:0001328HP:0001328Specific learning disability0HCCS CL E G H30524837ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional11
HP:0001328HP:0001328Specific learning disability0HDAC8 CL E G H5586913315ORPHA:3459Wilson-Turner syndromeHP:0040283 - Occasional37
HP:0001328HP:0001328Specific learning disability0HERC2 CL E G H89244868OMIM:176270Prader-Willi syndrome38
HP:0001328HP:0001328Specific learning disability0HINT1 CL E G H30944912ORPHA:324442Autosomal recessive axonal neuropathy with neuromyotoniaHP:0040284 - Very rare12
HP:0001328HP:0001328Specific learning disability0HIRA CL E G H72904916ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent3
HP:0001328HP:0001328Specific learning disability0HMGA2 CL E G H80915009ORPHA:9406312q14 microdeletion syndromeHP:0040281 - Very frequent2
HP:0001328HP:0001328Specific learning disability0HNRNPA1 CL E G H31785031ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementia31
HP:0001328HP:0001328Specific learning disability0HNRNPA2B1 CL E G H31815033ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementia5
HP:0001328HP:0001328Specific learning disability0HTT CL E G H30644851ORPHA:399Huntington disease12
HP:0001328HP:0001328Specific learning disability0IFNG CL E G H34585438ORPHA:805Tuberous sclerosis complexHP:0040282 - Frequent23
HP:0001328HP:0001328Specific learning disability0IFNG CL E G H34585438OMIM:613254Tuberous sclerosis-2.23
HP:0001328HP:0001328Specific learning disability0IGF2 CL E G H34815466ORPHA:231144Silver-Russell syndrome due to 11p15 microduplicationHP:0040283 - Occasional9
HP:0001328HP:0001328Specific learning disability0INPP5K CL E G H5176333882ORPHA:559Marinesco-Sjögren syndromeHP:0040281 - Very frequent7
HP:0001328HP:0001328Specific learning disability0IPW CL E G H36536109OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0IRF6 CL E G H36646121ORPHA:1300Autosomal dominant popliteal pterygium syndromeHP:0040283 - Occasional99
HP:0001328HP:0001328Specific learning disability0IRF6 CL E G H36646121ORPHA:199302Isolated cleft lipHP:0040284 - Very rare99
HP:0001328HP:0001328Specific learning disability0JAG1 CL E G H1826188OMIM:118450Alagille syndrome 1.257
HP:0001328HP:0001328Specific learning disability0JMJD1C CL E G H22103712313ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0JRK CL E G H86296199ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional
HP:0001328HP:0001328Specific learning disability0KAT6B CL E G H2352217582ORPHA:3047Blepharophimosis-intellectual disability syndrome, SBBYS typeHP:0040281 - Very frequent141
HP:0001328HP:0001328Specific learning disability0KCNA1 CL E G H37366218ORPHA:37612Episodic ataxia type 1HP:0040283 - Occasional145
HP:0001328HP:0001328Specific learning disability0KCNC3 CL E G H37486235ORPHA:98768Spinocerebellar ataxia type 1317
HP:0001328HP:0001328Specific learning disability0KCNJ2 CL E G H37596263OMIM:170390Andersen cardiodysrhythmic periodic paralysisHP:0040283 - Occasional193
HP:0001328HP:0001328Specific learning disability0KCNJ2 CL E G H37596263ORPHA:37553Andersen-Tawil syndromeHP:0040283 - Occasional193
HP:0001328HP:0001328Specific learning disability0KCNJ5 CL E G H37626266ORPHA:37553Andersen-Tawil syndromeHP:0040283 - Occasional128
HP:0001328HP:0001328Specific learning disability0KIF11 CL E G H38326388ORPHA:2526Microcephaly-lymphedema-chorioretinopathy syndromeHP:0040282 - Frequent46
HP:0001328HP:0001328Specific learning disability0KIFBP CL E G H2612823419ORPHA:66629Goldberg-Shprintzen megacolon syndromeHP:0040281 - Very frequent
HP:0001328HP:0001328Specific learning disability0KLF13 CL E G H5162113672OMIM:612001Chromosome 15q13.3 microdeletion syndrome
HP:0001328HP:0001328Specific learning disability0LARGE1 CL E G H92156511ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent136
HP:0001328HP:0001328Specific learning disability0LAS1L CL E G H8188725726ORPHA:3459Wilson-Turner syndromeHP:0040283 - Occasional8
HP:0001328HP:0001328Specific learning disability0LEMD3 CL E G H2359228887ORPHA:9406312q14 microdeletion syndromeHP:0040281 - Very frequent68
HP:0001328HP:0001328Specific learning disability0LTBP1 CL E G H40526714OMIM:619451CUTIS LAXA, AUTOSOMAL RECESSIVE, TYPE IIE; ARCL2E
HP:0001328HP:0001328Specific learning disability0LTBP4 CL E G H84256717ORPHA:98896Duchenne muscular dystrophyHP:0040281 - Very frequent92
HP:0001328HP:0001328Specific learning disability0LYST CL E G H11301968ORPHA:167Chédiak-Higashi syndromeHP:0040283 - Occasional239
HP:0001328HP:0001328Specific learning disability0MAGEL2 CL E G H545516814ORPHA:398069MAGEL2-related Prader-Willi-like syndromeHP:0040282 - Frequent63
HP:0001328HP:0001328Specific learning disability0MAGEL2 CL E G H545516814OMIM:176270Prader-Willi syndrome63
HP:0001328HP:0001328Specific learning disability0MAGEL2 CL E G H545516814ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040282 - Frequent63
HP:0001328HP:0001328Specific learning disability0MAGEL2 CL E G H545516814ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040282 - Frequent63
HP:0001328HP:0001328Specific learning disability0MAGEL2 CL E G H545516814ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040282 - Frequent63
HP:0001328HP:0001328Specific learning disability0MAN2B1 CL E G H41256826ORPHA:309282Alpha-mannosidosis, infantile formHP:0040281 - Very frequent136
HP:0001328HP:0001328Specific learning disability0MAP1B CL E G H41316836OMIM:618918PERIVENTRICULAR NODULAR HETEROTOPIA 9; PVNH9
HP:0001328HP:0001328Specific learning disability0MAP2K2 CL E G H56056842ORPHA:638Neurofibromatosis-Noonan syndromeHP:0040281 - Very frequent178
HP:0001328HP:0001328Specific learning disability0MAPT CL E G H41376893ORPHA:275864Behavioral variant of frontotemporal dementia140
HP:0001328HP:0001328Specific learning disability0MAPT CL E G H41376893ORPHA:240085Progressive supranuclear palsy-parkinsonism syndrome140
HP:0001328HP:0001328Specific learning disability0MAPT CL E G H41376893ORPHA:100069Semantic dementia140
HP:0001328HP:0001328Specific learning disability0MBTPS2 CL E G H5136015455ORPHA:2273Ichthyosis follicularis-alopecia-photophobia syndromeHP:0040281 - Very frequent22
HP:0001328HP:0001328Specific learning disability0MED13L CL E G H2338922962ORPHA:369891Developmental delay-facial dysmorphism syndrome due to MED13L deficiencyHP:0040282 - Frequent74
HP:0001328HP:0001328Specific learning disability0MICU1 CL E G H103671530OMIM:615673Myopathy with extrapyramidal signs14
HP:0001328HP:0001328Specific learning disability0MID1 CL E G H42817095ORPHA:2745Opitz GBBB syndromeHP:0040282 - Frequent57
HP:0001328HP:0001328Specific learning disability0MKRN3 CL E G H76817114OMIM:176270Prader-Willi syndrome5
HP:0001328HP:0001328Specific learning disability0MKRN3-AS1 CL E G H10108OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0MLXIPL CL E G H5108512744OMIM:194050Williams-Beuren syndrome1
HP:0001328HP:0001328Specific learning disability0MORC2 CL E G H2288023573ORPHA:466768Autosomal dominant Charcot-Marie-Tooth disease type 2ZHP:0040282 - Frequent8
HP:0001328HP:0001328Specific learning disability0MSX1 CL E G H44877391ORPHA:199302Isolated cleft lipHP:0040284 - Very rare12
HP:0001328HP:0001328Specific learning disability0MTHFR CL E G H45247436ORPHA:395Homocystinuria due to methylene tetrahydrofolate reductase deficiencyHP:0040283 - Occasional183
HP:0001328HP:0001328Specific learning disability0MTOR CL E G H24753942ORPHA:457485Macrocephaly-intellectual disability-neurodevelopmental disorder-small thorax syndromeHP:0040282 - Frequent68
HP:0001328HP:0001328Specific learning disability0MYCN CL E G H46137559OMIM:164280Feingold syndrome 1.35
HP:0001328HP:0001328Specific learning disability0MYCN CL E G H46137559ORPHA:391641Feingold syndrome type 1HP:0040282 - Frequent35
HP:0001328HP:0001328Specific learning disability0MYO5A CL E G H46447602ORPHA:33445Neuroectodermal melanolysosomal diseaseHP:0040281 - Very frequent35
HP:0001328HP:0001328Specific learning disability0ND1 CL E G H45357455ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0ND4 CL E G H45387459ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0ND5 CL E G H45407461ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0ND6 CL E G H45417462ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0NDN CL E G H46927675ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0NDN CL E G H46927675ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0NDN CL E G H46927675ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0NDUFB11 CL E G H5453920372ORPHA:2556Microphthalmia with linear skin defects syndromeHP:0040283 - Occasional3
HP:0001328HP:0001328Specific learning disability0NECTIN1 CL E G H58189706ORPHA:199302Isolated cleft lipHP:0040284 - Very rare4
HP:0001328HP:0001328Specific learning disability0NF1 CL E G H47637765ORPHA:9768517q11 microdeletion syndromeHP:0040282 - Frequent1952
HP:0001328HP:0001328Specific learning disability0NF1 CL E G H47637765ORPHA:363700Neurofibromatosis type 1 due to NF1 mutation or intragenic deletionHP:0040282 - Frequent1952
HP:0001328HP:0001328Specific learning disability0NF1 CL E G H47637765OMIM:162200Neurofibromatosis, type I1952
HP:0001328HP:0001328Specific learning disability0NF1 CL E G H47637765ORPHA:638Neurofibromatosis-Noonan syndromeHP:0040281 - Very frequent1952
HP:0001328HP:0001328Specific learning disability0NF1 CL E G H47637765OMIM:601321Neurofibromatosis-Noonan syndrome1952
HP:0001328HP:0001328Specific learning disability0NIPA1 CL E G H12360617043ORPHA:26118315q11.2 microdeletion syndrome117
HP:0001328HP:0001328Specific learning disability0NIPA2 CL E G H8161417044ORPHA:26118315q11.2 microdeletion syndrome1
HP:0001328HP:0001328Specific learning disability0NODAL CL E G H48387865ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent45
HP:0001328HP:0001328Specific learning disability0NODAL CL E G H48387865ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent45
HP:0001328HP:0001328Specific learning disability0NODAL CL E G H48387865ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent45
HP:0001328HP:0001328Specific learning disability0NODAL CL E G H48387865ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent45
HP:0001328HP:0001328Specific learning disability0NODAL CL E G H48387865ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent45
HP:0001328HP:0001328Specific learning disability0NOTCH3 CL E G H48547883ORPHA:136Cerebral autosomal dominant arteriopathy-subcortical infarcts-leukoencephalopathy144
HP:0001328HP:0001328Specific learning disability0NPAP1 CL E G H237421190OMIM:176270Prader-Willi syndrome1
HP:0001328HP:0001328Specific learning disability0NSD1 CL E G H6432414234ORPHA:2284155q35 microduplication syndromeHP:0040281 - Very frequent544
HP:0001328HP:0001328Specific learning disability0NSD1 CL E G H6432414234ORPHA:821Sotos syndrome544
HP:0001328HP:0001328Specific learning disability0NTN1 CL E G H94238029ORPHA:238722Familial congenital mirror movementsHP:0040283 - Occasional
HP:0001328HP:0001328Specific learning disability0NTRK1 CL E G H49148031ORPHA:642Hereditary sensory and autonomic neuropathy type 4HP:0040282 - Frequent97
HP:0001328HP:0001328Specific learning disability0OCA2 CL E G H49488101ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040282 - Frequent121
HP:0001328HP:0001328Specific learning disability0OCA2 CL E G H49488101ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040282 - Frequent121
HP:0001328HP:0001328Specific learning disability0OCA2 CL E G H49488101ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040282 - Frequent121
HP:0001328HP:0001328Specific learning disability0OPA3 CL E G H802078142ORPHA:67036Autosomal dominant optic atrophy and cataract163
HP:0001328HP:0001328Specific learning disability0ORC1 CL E G H49988487ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional53
HP:0001328HP:0001328Specific learning disability0ORC4 CL E G H50008490ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional21
HP:0001328HP:0001328Specific learning disability0ORC6 CL E G H2359417151ORPHA:2554Ear-patella-short stature syndromeHP:0040283 - Occasional39
HP:0001328HP:0001328Specific learning disability0PAPPA2 CL E G H6067614615OMIM:619489SHORT STATURE, DAUBER-ARGENTE TYPE; SSDA2
HP:0001328HP:0001328Specific learning disability0PDE4D CL E G H51448783ORPHA:280651Acrodysostosis with multiple hormone resistanceHP:0040281 - Very frequent113
HP:0001328HP:0001328Specific learning disability0PI4KA CL E G H52978983ORPHA:98889Bilateral perisylvian polymicrogyriaHP:0040282 - Frequent11
HP:0001328HP:0001328Specific learning disability0PIEZO2 CL E G H6389526270ORPHA:2461Marden-Walker syndromeHP:0040281 - Very frequent77
HP:0001328HP:0001328Specific learning disability0PIGH CL E G H52838964OMIM:618010Glycosylphosphatidylinositol biosynthesis defect 171
HP:0001328HP:0001328Specific learning disability0PIK3C2A CL E G H52868971ORPHA:557003Oculocerebrodental syndromeHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0PLA2G6 CL E G H83989039ORPHA:199351Adult-onset dystonia-parkinsonism133
HP:0001328HP:0001328Specific learning disability0PLCH1 CL E G H2300729185ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0PMPCA CL E G H2320318667ORPHA:1170Autosomal recessive cerebelloparenchymal disorder type 37
HP:0001328HP:0001328Specific learning disability0PNKP CL E G H112849154ORPHA:459033Ataxia-oculomotor apraxia type 4244
HP:0001328HP:0001328Specific learning disability0POMGNT1 CL E G H5562419139ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent180
HP:0001328HP:0001328Specific learning disability0POMGNT2 CL E G H8489225902ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent33
HP:0001328HP:0001328Specific learning disability0POMK CL E G H8419726267ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent18
HP:0001328HP:0001328Specific learning disability0POMT1 CL E G H105859202ORPHA:86812POMT1-related limb-girdle muscular dystrophy R11213
HP:0001328HP:0001328Specific learning disability0POMT1 CL E G H105859202ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent213
HP:0001328HP:0001328Specific learning disability0POMT2 CL E G H2995419743ORPHA:206559POMT2-related limb-girdle muscular dystrophy R14HP:0040282 - Frequent221
HP:0001328HP:0001328Specific learning disability0POMT2 CL E G H2995419743ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent221
HP:0001328HP:0001328Specific learning disability0PRKAR1A CL E G H55739388ORPHA:280651Acrodysostosis with multiple hormone resistanceHP:0040281 - Very frequent134
HP:0001328HP:0001328Specific learning disability0PRKAR1B CL E G H55759390ORPHA:412066PRKAR1B-related neurodegenerative dementia with intermediate filaments2
HP:0001328HP:0001328Specific learning disability0PRMT7 CL E G H5449625557ORPHA:464288Short stature-brachydactyly-obesity-global developmental delay syndromeHP:0040282 - Frequent6
HP:0001328HP:0001328Specific learning disability0PRNP CL E G H56219449ORPHA:280397Familial Alzheimer-like prion diseaseHP:0040281 - Very frequent69
HP:0001328HP:0001328Specific learning disability0PRRT2 CL E G H11247630500ORPHA:98811Paroxysmal exertion-induced dyskinesiaHP:0040283 - Occasional94
HP:0001328HP:0001328Specific learning disability0PSEN1 CL E G H56639508ORPHA:275864Behavioral variant of frontotemporal dementia241
HP:0001328HP:0001328Specific learning disability0PSEN1 CL E G H56639508ORPHA:100069Semantic dementia241
HP:0001328HP:0001328Specific learning disability0PSMD12 CL E G H57189557ORPHA:52996217q24.2 microdeletion syndrome4
HP:0001328HP:0001328Specific learning disability0PTCH1 CL E G H57279585ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent665
HP:0001328HP:0001328Specific learning disability0PTCH1 CL E G H57279585ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent665
HP:0001328HP:0001328Specific learning disability0PTCH1 CL E G H57279585ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent665
HP:0001328HP:0001328Specific learning disability0PTCH1 CL E G H57279585ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent665
HP:0001328HP:0001328Specific learning disability0PTCH1 CL E G H57279585ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent665
HP:0001328HP:0001328Specific learning disability0PTDSS1 CL E G H97919587ORPHA:2658Lenz-Majewski hyperostotic dwarfismHP:0040281 - Very frequent6
HP:0001328HP:0001328Specific learning disability0PWAR1 CL E G H14562430089OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0PWRN1 CL E G H79111433235OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0RAD51 CL E G H58889817ORPHA:238722Familial congenital mirror movementsHP:0040283 - Occasional9
HP:0001328HP:0001328Specific learning disability0RDH11 CL E G H5110917964ORPHA:436245Retinitis pigmentosa-juvenile cataract-short stature-intellectual disability syndromeHP:0040282 - Frequent2
HP:0001328HP:0001328Specific learning disability0RNF168 CL E G H16591826661ORPHA:420741RIDDLE syndromeHP:0040282 - Frequent7
HP:0001328HP:0001328Specific learning disability0RNU4ATAC CL E G H10015168334016ORPHA:2636Microcephalic osteodysplastic primordial dwarfism types I and IIIHP:0040281 - Very frequent15
HP:0001328HP:0001328Specific learning disability0RPS23 CL E G H622810410OMIM:617412BRACHYCEPHALY, TRICHOMEGALY, AND DEVELOPMENTAL DELAY; BTDD2
HP:0001328HP:0001328Specific learning disability0RREB1 CL E G H623910449ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0RXYLT1 CL E G H1032913530ORPHA:899Walker-Warburg syndromeHP:0040281 - Very frequent
HP:0001328HP:0001328Specific learning disability0SARDH CL E G H175710536ORPHA:3129Sarcosinemia4
HP:0001328HP:0001328Specific learning disability0SBDS CL E G H5111919440OMIM:260400Shwachman-Diamond syndrome 1.26
HP:0001328HP:0001328Specific learning disability0SBF2 CL E G H818462135ORPHA:99956Charcot-Marie-Tooth disease type 4B2180
HP:0001328HP:0001328Specific learning disability0SC5D CL E G H630910547ORPHA:46059LathosterolosisHP:0040281 - Very frequent80
HP:0001328HP:0001328Specific learning disability0SEC24C CL E G H963210705ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0SETD2 CL E G H2907218420ORPHA:821Sotos syndrome60
HP:0001328HP:0001328Specific learning disability0SH2B1 CL E G H2597030417ORPHA:261197Proximal 16p11.2 microdeletion syndromeHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent67
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent67
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent67
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent67
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent67
HP:0001328HP:0001328Specific learning disability0SHH CL E G H646910848OMIM:147250Solitary median maxillary central incisor67
HP:0001328HP:0001328Specific learning disability0SIL1 CL E G H6437424624ORPHA:559Marinesco-Sjögren syndromeHP:0040281 - Very frequent67
HP:0001328HP:0001328Specific learning disability0SIM1 CL E G H649210882ORPHA:1718296q16 microdeletion syndromeHP:0040282 - Frequent40
HP:0001328HP:0001328Specific learning disability0SIM1 CL E G H649210882ORPHA:398079SIM1-related Prader-Willi-like syndromeHP:0040282 - Frequent40
HP:0001328HP:0001328Specific learning disability0SIX3 CL E G H649610889ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0SIX3 CL E G H649610889ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0SIX3 CL E G H649610889ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0SIX3 CL E G H649610889ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0SIX3 CL E G H649610889ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0SIX6 CL E G H499010892OMIM:206900Microphthalmia, syndromic 3.20
HP:0001328HP:0001328Specific learning disability0SLC25A15 CL E G H1016610985ORPHA:415Hyperornithinemia-hyperammonemia-homocitrullinuria syndromeHP:0040282 - Frequent88
HP:0001328HP:0001328Specific learning disability0SLC25A15 CL E G H1016610985OMIM:238970Hyperornithinemia-Hyperammonemia-Homocitrullinuria syndrome.88
HP:0001328HP:0001328Specific learning disability0SLC2A1 CL E G H651311005ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional255
HP:0001328HP:0001328Specific learning disability0SLC2A1 CL E G H651311005OMIM:606777Glut1 deficiency syndrome 1.255
HP:0001328HP:0001328Specific learning disability0SLC2A1 CL E G H651311005ORPHA:98811Paroxysmal exertion-induced dyskinesiaHP:0040283 - Occasional255
HP:0001328HP:0001328Specific learning disability0SLC2A10 CL E G H8103113444ORPHA:3342Arterial tortuosity syndromeHP:0040283 - Occasional178
HP:0001328HP:0001328Specific learning disability0SLC2A3 CL E G H651511007ORPHA:399Huntington disease1
HP:0001328HP:0001328Specific learning disability0SMAD4 CL E G H40896770ORPHA:2588Myhre syndromeHP:0040281 - Very frequent504
HP:0001328HP:0001328Specific learning disability0SMARCA2 CL E G H659511098ORPHA:3051Nicolaides-Baraitser syndromeHP:0040281 - Very frequent146
HP:0001328HP:0001328Specific learning disability0SMC1A CL E G H824311111ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent135
HP:0001328HP:0001328Specific learning disability0SMPD1 CL E G H660911120ORPHA:77293Niemann-Pick disease type BHP:0040284 - Very rare164
HP:0001328HP:0001328Specific learning disability0SNORD115-1 CL E G H33843333020OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0SNORD116-1 CL E G H10003341333067OMIM:176270Prader-Willi syndrome
HP:0001328HP:0001328Specific learning disability0SNRPN CL E G H663811164ORPHA:98754Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15HP:0040282 - Frequent37
HP:0001328HP:0001328Specific learning disability0SNRPN CL E G H663811164ORPHA:177901Prader-Willi syndrome due to paternal deletion of 15q11q13 type 1HP:0040282 - Frequent37
HP:0001328HP:0001328Specific learning disability0SNRPN CL E G H663811164ORPHA:177904Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2HP:0040282 - Frequent37
HP:0001328HP:0001328Specific learning disability0SOX2 CL E G H665711195OMIM:206900Microphthalmia, syndromic 3.33
HP:0001328HP:0001328Specific learning disability0SPART CL E G H2311118514ORPHA:101000Autosomal recessive spastic paraplegia type 20HP:0040282 - Frequent66
HP:0001328HP:0001328Specific learning disability0SPG11 CL E G H8020811226ORPHA:2822Autosomal recessive spastic paraplegia type 11HP:0040281 - Very frequent287
HP:0001328HP:0001328Specific learning disability0SPG11 CL E G H8020811226OMIM:604360Spastic paraplegia 11, autosomal recessive.287
HP:0001328HP:0001328Specific learning disability0SPG7 CL E G H668711237ORPHA:99013Spastic paraplegia type 7HP:0040284 - Very rare171
HP:0001328HP:0001328Specific learning disability0SPRED1 CL E G H16174220249OMIM:611431Legius syndrome.136
HP:0001328HP:0001328Specific learning disability0SPRED1 CL E G H16174220249ORPHA:137605Legius syndrome136
HP:0001328HP:0001328Specific learning disability0SPTBN1 CL E G H671111275OMIM:619475DEVELOPMENTAL DELAY, IMPAIRED SPEECH, AND BEHAVIORAL ABNORMALITIES; DDISBA
HP:0001328HP:0001328Specific learning disability0SQSTM1 CL E G H887811280ORPHA:275864Behavioral variant of frontotemporal dementia62
HP:0001328HP:0001328Specific learning disability0SQSTM1 CL E G H887811280ORPHA:275872Frontotemporal dementia with motor neuron disease62
HP:0001328HP:0001328Specific learning disability0SRP54 CL E G H672911301OMIM:260400Shwachman-Diamond syndrome 1.
HP:0001328HP:0001328Specific learning disability0SRPX2 CL E G H2728630668ORPHA:98889Bilateral perisylvian polymicrogyriaHP:0040282 - Frequent50
HP:0001328HP:0001328Specific learning disability0SRPX2 CL E G H2728630668ORPHA:1945Rolandic epilepsyHP:0040283 - Occasional50
HP:0001328HP:0001328Specific learning disability0SRPX2 CL E G H2728630668ORPHA:163721Rolandic epilepsy-speech dyspraxia syndromeHP:0040283 - Occasional50
HP:0001328HP:0001328Specific learning disability0SRY CL E G H673611311ORPHA:177245,X/46,XY mixed gonadal dysgenesis23
HP:0001328HP:0001328Specific learning disability0STAG2 CL E G H1073511355ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0STAG2 CL E G H1073511355ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0STIL CL E G H649110879ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent99
HP:0001328HP:0001328Specific learning disability0STIL CL E G H649110879ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent99
HP:0001328HP:0001328Specific learning disability0STIL CL E G H649110879ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent99
HP:0001328HP:0001328Specific learning disability0STIL CL E G H649110879ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent99
HP:0001328HP:0001328Specific learning disability0STIL CL E G H649110879ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent99
HP:0001328HP:0001328Specific learning disability0STIM1 CL E G H678611386OMIM:185070Stormorken syndrome31
HP:0001328HP:0001328Specific learning disability0SUGCT CL E G H7978316001ORPHA:35706Glutaric acidemia type 3HP:0040283 - Occasional8
HP:0001328HP:0001328Specific learning disability0SYN1 CL E G H685311494OMIM:300491Epilepsy, X-linked, with variable learning disabilities and behavior disorders.58
HP:0001328HP:0001328Specific learning disability0SYN1 CL E G H685311494ORPHA:85294X-linked epilepsy-learning disabilities-behavior disorders syndromeHP:0040281 - Very frequent58
HP:0001328HP:0001328Specific learning disability0TARDBP CL E G H2343511571ORPHA:275872Frontotemporal dementia with motor neuron disease65
HP:0001328HP:0001328Specific learning disability0TBK1 CL E G H2911011584ORPHA:275872Frontotemporal dementia with motor neuron disease20
HP:0001328HP:0001328Specific learning disability0TBX1 CL E G H689911592ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0TBX1 CL E G H689911592OMIM:188400Digeorge syndrome.32
HP:0001328HP:0001328Specific learning disability0TBX1 CL E G H689911592OMIM:192430Velocardiofacial syndrome.32
HP:0001328HP:0001328Specific learning disability0TCF12 CL E G H693811623OMIM:619718HYPOGONADOTROPIC HYPOGONADISM 26 WITH OR WITHOUT ANOSMIA; HH2628
HP:0001328HP:0001328Specific learning disability0TCF4 CL E G H692511634ORPHA:2896Pitt-Hopkins syndromeHP:0040281 - Very frequent241
HP:0001328HP:0001328Specific learning disability0TCTN3 CL E G H2612324519ORPHA:2753Orofaciodigital syndrome type 4HP:0040281 - Very frequent31
HP:0001328HP:0001328Specific learning disability0TDGF1 CL E G H699711701ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0TDGF1 CL E G H699711701ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0TDGF1 CL E G H699711701ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0TDGF1 CL E G H699711701ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0TDGF1 CL E G H699711701ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent1
HP:0001328HP:0001328Specific learning disability0TERC CL E G H701211727OMIM:127550Dyskeratosis congenita, autosomal dominant, 1.48
HP:0001328HP:0001328Specific learning disability0TERT CL E G H701511730OMIM:127550Dyskeratosis congenita, autosomal dominant, 1.238
HP:0001328HP:0001328Specific learning disability0TGIF1 CL E G H705011776ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0TGIF1 CL E G H705011776ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0TGIF1 CL E G H705011776ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0TGIF1 CL E G H705011776ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0TGIF1 CL E G H705011776ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent32
HP:0001328HP:0001328Specific learning disability0THOC6 CL E G H7922828369ORPHA:363444THOC6-related developmental delay-microcephaly-facial dysmorphism syndromeHP:0040283 - Occasional1
HP:0001328HP:0001328Specific learning disability0TINF2 CL E G H2627711824OMIM:127550Dyskeratosis congenita, autosomal dominant, 1.60
HP:0001328HP:0001328Specific learning disability0TMEM106B CL E G H5466422407ORPHA:275864Behavioral variant of frontotemporal dementia
HP:0001328HP:0001328Specific learning disability0TMEM106B CL E G H5466422407ORPHA:100069Semantic dementia
HP:0001328HP:0001328Specific learning disability0TMEM63A CL E G H972529118OMIM:618688LEUKODYSTROPHY, HYPOMYELINATING, 19, TRANSIENT INFANTILE; HLD19
HP:0001328HP:0001328Specific learning disability0TMEM94 CL E G H977228983OMIM:618316Intellectual developmental disorder with cardiac defects and dysmorphic facies1
HP:0001328HP:0001328Specific learning disability0TP63 CL E G H862615979ORPHA:199302Isolated cleft lipHP:0040284 - Very rare140
HP:0001328HP:0001328Specific learning disability0TREM2 CL E G H5420917761ORPHA:275864Behavioral variant of frontotemporal dementia31
HP:0001328HP:0001328Specific learning disability0TREM2 CL E G H5420917761ORPHA:100069Semantic dementia31
HP:0001328HP:0001328Specific learning disability0TRIO CL E G H720412303ORPHA:476126Micrognathia-recurrent infections-behavioral abnormalities-mild intellectual disability syndromeHP:0040283 - Occasional8
HP:0001328HP:0001328Specific learning disability0TRNF CL E G H45587481ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNH CL E G H45647487ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNL1 CL E G H45677490ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNQ CL E G H45727495ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNS1 CL E G H45747497ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNS2 CL E G H45757498ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TRNW CL E G H45787501ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0TSC1 CL E G H724812362ORPHA:805Tuberous sclerosis complexHP:0040282 - Frequent1090
HP:0001328HP:0001328Specific learning disability0TSC1 CL E G H724812362OMIM:191100Tuberous sclerosis-1.1090
HP:0001328HP:0001328Specific learning disability0TSC2 CL E G H724912363ORPHA:805Tuberous sclerosis complexHP:0040282 - Frequent2738
HP:0001328HP:0001328Specific learning disability0TSC2 CL E G H724912363OMIM:613254Tuberous sclerosis-2.2738
HP:0001328HP:0001328Specific learning disability0TUBB2B CL E G H34773330829OMIM:610031Cortical dysplasia, complex, with other brain malformations 7.39
HP:0001328HP:0001328Specific learning disability0TUBB3 CL E G H1038120772OMIM:600638Fibrosis of extraocular muscles, congenital, 3A, with or without extraocularinvolvementHP:0040283 - Occasional64
HP:0001328HP:0001328Specific learning disability0TUBB4A CL E G H1038220774OMIM:612438Leukodystrophy, hypomyelinating, 6.66
HP:0001328HP:0001328Specific learning disability0TUBG1 CL E G H728312417ORPHA:26118315q11.2 microdeletion syndrome14
HP:0001328HP:0001328Specific learning disability0TWNK CL E G H566521160OMIM:271245Mitochondrial DNA depletion syndrome 7 (hepatocerebral type).113
HP:0001328HP:0001328Specific learning disability0UBE3B CL E G H8991013478ORPHA:2707Oculocerebrofacial syndrome, Kaufman typeHP:0040281 - Very frequent13
HP:0001328HP:0001328Specific learning disability0UFD1 CL E G H735312520ORPHA:56722q11.2 deletion syndromeHP:0040282 - Frequent
HP:0001328HP:0001328Specific learning disability0VCP CL E G H741512666ORPHA:275864Behavioral variant of frontotemporal dementia63
HP:0001328HP:0001328Specific learning disability0VCP CL E G H741512666ORPHA:275872Frontotemporal dementia with motor neuron disease63
HP:0001328HP:0001328Specific learning disability0VCP CL E G H741512666ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementia63
HP:0001328HP:0001328Specific learning disability0VPS13D CL E G H5518723595ORPHA:95434Autosomal recessive cerebellar ataxia-movement disorder syndrome
HP:0001328HP:0001328Specific learning disability0VPS41 CL E G H2707212713ORPHA:95434Autosomal recessive cerebellar ataxia-movement disorder syndrome
HP:0001328HP:0001328Specific learning disability0WAS CL E G H745412731ORPHA:906Wiskott-Aldrich syndromeHP:0040282 - Frequent65
HP:0001328HP:0001328Specific learning disability0WDR1 CL E G H994812754OMIM:150550Periodic fever, immunodeficiency, and thrombocytopenia syndrome
HP:0001328HP:0001328Specific learning disability0WIPF1 CL E G H745612736ORPHA:906Wiskott-Aldrich syndromeHP:0040282 - Frequent6
HP:0001328HP:0001328Specific learning disability0WNT5A CL E G H747412784ORPHA:3107Autosomal dominant Robinow syndromeHP:0040283 - Occasional98
HP:0001328HP:0001328Specific learning disability0YY1AP1 CL E G H5524930935ORPHA:79094Grange syndromeHP:0040281 - Very frequent5
HP:0001328HP:0001328Specific learning disability0ZFYVE26 CL E G H2350320761ORPHA:100996Autosomal recessive spastic paraplegia type 15HP:0040283 - Occasional189
HP:0001328HP:0001328Specific learning disability0ZIC2 CL E G H754612873ORPHA:93925Alobar holoprosencephalyHP:0040282 - Frequent34
HP:0001328HP:0001328Specific learning disability0ZIC2 CL E G H754612873ORPHA:93924Lobar holoprosencephalyHP:0040282 - Frequent34
HP:0001328HP:0001328Specific learning disability0ZIC2 CL E G H754612873ORPHA:93926Midline interhemispheric variant of holoprosencephalyHP:0040282 - Frequent34
HP:0001328HP:0001328Specific learning disability0ZIC2 CL E G H754612873ORPHA:220386Semilobar holoprosencephalyHP:0040282 - Frequent34
HP:0001328HP:0001328Specific learning disability0ZIC2 CL E G H754612873ORPHA:280195Septopreoptic holoprosencephalyHP:0040282 - Frequent34
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ABCD1 CL E G H21561ORPHA:139396X-linked cerebral adrenoleukodystrophyHP:0040283 - Occasional135
HP:0001328HP:0010522Dyslexia1APC CL E G H324583ORPHA:261584Familial adenomatous polyposis due to 5q22.2 microdeletionHP:0040282 - Frequent3179
HP:0001328HP:0002442Dyscalculia1APC2 CL E G H1029724036ORPHA:821Sotos syndromeHP:0040283 - Occasional1
HP:0001328HP:0010794Impaired visuospatial constructive cognition1BPTF CL E G H21863581ORPHA:52996217q24.2 microdeletion syndromeHP:0040282 - Frequent2
HP:0001328HP:0002442Dyscalculia1C9ORF72 CL E G H20322828337OMIM:105550Amyotrophic lateral sclerosis and/or frontotemporal dementia 1.56
HP:0001328HP:0010522Dyslexia1C9ORF72 CL E G H20322828337ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent56
HP:0001328HP:0002442Dyscalculia1C9ORF72 CL E G H20322828337ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent56
HP:0001328HP:0002442Dyscalculia1C9ORF72 CL E G H20322828337ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent56
HP:0001328HP:0010522Dyslexia1C9ORF72 CL E G H20322828337ORPHA:100069Semantic dementiaHP:0040282 - Frequent56
HP:0001328HP:0002442Dyscalculia1CACNA1A CL E G H7731388OMIM:141500Migraine, familial hemiplegic, 1.449
HP:0001328HP:0010522Dyslexia1CACNA1H CL E G H89121395ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional75
HP:0001328HP:0010794Impaired visuospatial constructive cognition1CACNA1H CL E G H89121395ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional75
HP:0001328HP:0002442Dyscalculia1CHCHD10 CL E G H40091615559ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent11
HP:0001328HP:0002442Dyscalculia1CHMP2B CL E G H2597824537ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent42
HP:0001328HP:0010522Dyslexia1CHMP2B CL E G H2597824537ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent42
HP:0001328HP:0002442Dyscalculia1CHMP2B CL E G H2597824537OMIM:600795Frontotemporal dementia and/or amytrophic lateral sclerosis 7.42
HP:0001328HP:0010522Dyslexia1CHMP2B CL E G H2597824537ORPHA:100069Semantic dementiaHP:0040282 - Frequent42
HP:0001328HP:0010794Impaired visuospatial constructive cognition1COX1 CL E G H45127419ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1COX2 CL E G H45137421ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1COX3 CL E G H45147422ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0002442Dyscalculia1CYLD CL E G H15402584OMIM:619132FRONTOTEMPORAL DEMENTIA AND/OR AMYOTROPHIC LATERAL SCLEROSIS 8; FTDALS8126
HP:0001328HP:0010794Impaired visuospatial constructive cognition1DARS2 CL E G H5515725538ORPHA:137898Leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndromeHP:0040283 - Occasional60
HP:0001328HP:0010522Dyslexia1DNAAF4 CL E G H16158221493OMIM:127700Dyslexia, susceptibility to, 1.27
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ELN CL E G H20063327OMIM:194050Williams-Beuren syndrome172
HP:0001328HP:0002442Dyscalculia1FMR1 CL E G H23323775ORPHA:449291Symptomatic form of fragile X syndrome in female carriersHP:0040283 - Occasional30
HP:0001328HP:0010522Dyslexia1FRMD5 CL E G H8497828214OMIM:620094
HP:0001328HP:0002442Dyscalculia1FUS CL E G H25214010ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent105
HP:0001328HP:0010794Impaired visuospatial constructive cognition1GABRA1 CL E G H25544075ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional134
HP:0001328HP:0010522Dyslexia1GABRA1 CL E G H25544075ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional134
HP:0001328HP:0010794Impaired visuospatial constructive cognition1GABRB3 CL E G H25624083ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional57
HP:0001328HP:0010522Dyslexia1GABRB3 CL E G H25624083ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional57
HP:0001328HP:0010794Impaired visuospatial constructive cognition1GABRG2 CL E G H25664087ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional139
HP:0001328HP:0010522Dyslexia1GABRG2 CL E G H25664087ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional139
HP:0001328HP:0010522Dyslexia1GCLC CL E G H27294311ORPHA:33574Glutamate-cysteine ligase deficiencyHP:0040283 - Occasional2
HP:0001328HP:0002442Dyscalculia1GRN CL E G H28964601ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent126
HP:0001328HP:0010522Dyslexia1GRN CL E G H28964601ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent126
HP:0001328HP:0010522Dyslexia1GRN CL E G H28964601ORPHA:100069Semantic dementiaHP:0040282 - Frequent126
HP:0001328HP:0002442Dyscalculia1HNRNPA1 CL E G H31785031ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementiaHP:0040283 - Occasional31
HP:0001328HP:0002442Dyscalculia1HNRNPA2B1 CL E G H31815033ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementiaHP:0040283 - Occasional5
HP:0001328HP:0010794Impaired visuospatial constructive cognition1HTT CL E G H30644851ORPHA:399Huntington diseaseHP:0040283 - Occasional12
HP:0001328HP:0010522Dyslexia1JRK CL E G H86296199ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional
HP:0001328HP:0010794Impaired visuospatial constructive cognition1JRK CL E G H86296199ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional
HP:0001328HP:0010794Impaired visuospatial constructive cognition1KCNC3 CL E G H37486235ORPHA:98768Spinocerebellar ataxia type 13HP:0040282 - Frequent17
HP:0001328HP:0010522Dyslexia1MAP1B CL E G H41316836OMIM:618918PERIVENTRICULAR NODULAR HETEROTOPIA 9; PVNH9
HP:0001328HP:0002442Dyscalculia1MAP1B CL E G H41316836OMIM:618918PERIVENTRICULAR NODULAR HETEROTOPIA 9; PVNH9
HP:0001328HP:0010522Dyslexia1MAPT CL E G H41376893ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent140
HP:0001328HP:0002442Dyscalculia1MAPT CL E G H41376893ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent140
HP:0001328HP:0010794Impaired visuospatial constructive cognition1MAPT CL E G H41376893ORPHA:240085Progressive supranuclear palsy-parkinsonism syndromeHP:0040283 - Occasional140
HP:0001328HP:0010522Dyslexia1MAPT CL E G H41376893ORPHA:100069Semantic dementiaHP:0040282 - Frequent140
HP:0001328HP:0010794Impaired visuospatial constructive cognition1MLXIPL CL E G H5108512744OMIM:194050Williams-Beuren syndrome1
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ND1 CL E G H45357455ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ND4 CL E G H45387459ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ND5 CL E G H45407461ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1ND6 CL E G H45417462ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1NF1 CL E G H47637765ORPHA:363700Neurofibromatosis type 1 due to NF1 mutation or intragenic deletionHP:0040283 - Occasional1952
HP:0001328HP:0010522Dyslexia1NIPA1 CL E G H12360617043ORPHA:26118315q11.2 microdeletion syndromeHP:0040282 - Frequent117
HP:0001328HP:0010522Dyslexia1NIPA2 CL E G H8161417044ORPHA:26118315q11.2 microdeletion syndromeHP:0040282 - Frequent1
HP:0001328HP:0010794Impaired visuospatial constructive cognition1NOTCH3 CL E G H48547883ORPHA:136Cerebral autosomal dominant arteriopathy-subcortical infarcts-leukoencephalopathyHP:0040283 - Occasional144
HP:0001328HP:0002442Dyscalculia1NSD1 CL E G H6432414234ORPHA:821Sotos syndromeHP:0040283 - Occasional544
HP:0001328HP:0010522Dyslexia1OPA3 CL E G H802078142ORPHA:67036Autosomal dominant optic atrophy and cataractHP:0040283 - Occasional163
HP:0001328HP:0010522Dyslexia1PLA2G6 CL E G H83989039ORPHA:199351Adult-onset dystonia-parkinsonismHP:0040282 - Frequent133
HP:0001328HP:0010794Impaired visuospatial constructive cognition1PMPCA CL E G H2320318667ORPHA:1170Autosomal recessive cerebelloparenchymal disorder type 3HP:0040283 - Occasional7
HP:0001328HP:0010522Dyslexia1PNKP CL E G H112849154ORPHA:459033Ataxia-oculomotor apraxia type 4HP:0040283 - Occasional244
HP:0001328HP:0002442Dyscalculia1PNKP CL E G H112849154ORPHA:459033Ataxia-oculomotor apraxia type 4HP:0040283 - Occasional244
HP:0001328HP:0010794Impaired visuospatial constructive cognition1POMT1 CL E G H105859202ORPHA:86812POMT1-related limb-girdle muscular dystrophy R11HP:0040283 - Occasional213
HP:0001328HP:0010794Impaired visuospatial constructive cognition1PRKAR1B CL E G H55759390ORPHA:412066PRKAR1B-related neurodegenerative dementia with intermediate filamentsHP:0040282 - Frequent2
HP:0001328HP:0002442Dyscalculia1PSEN1 CL E G H56639508ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent241
HP:0001328HP:0010522Dyslexia1PSEN1 CL E G H56639508ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent241
HP:0001328HP:0010522Dyslexia1PSEN1 CL E G H56639508ORPHA:100069Semantic dementiaHP:0040282 - Frequent241
HP:0001328HP:0010794Impaired visuospatial constructive cognition1PSMD12 CL E G H57189557ORPHA:52996217q24.2 microdeletion syndromeHP:0040282 - Frequent4
HP:0001328HP:0010522Dyslexia1SARDH CL E G H175710536ORPHA:3129SarcosinemiaHP:0040283 - Occasional4
HP:0001328HP:0002442Dyscalculia1SETD2 CL E G H2907218420ORPHA:821Sotos syndromeHP:0040283 - Occasional60
HP:0001328HP:0010794Impaired visuospatial constructive cognition1SLC2A1 CL E G H651311005ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional255
HP:0001328HP:0010522Dyslexia1SLC2A1 CL E G H651311005ORPHA:64280Childhood absence epilepsyHP:0040283 - Occasional255
HP:0001328HP:0010794Impaired visuospatial constructive cognition1SLC2A3 CL E G H651511007ORPHA:399Huntington diseaseHP:0040283 - Occasional1
HP:0001328HP:0010522Dyslexia1SPTBN1 CL E G H671111275OMIM:619475DEVELOPMENTAL DELAY, IMPAIRED SPEECH, AND BEHAVIORAL ABNORMALITIES; DDISBA
HP:0001328HP:0002442Dyscalculia1SQSTM1 CL E G H887811280ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent62
HP:0001328HP:0010522Dyslexia1SQSTM1 CL E G H887811280ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent62
HP:0001328HP:0002442Dyscalculia1SQSTM1 CL E G H887811280ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent62
HP:0001328HP:0002442Dyscalculia1SRY CL E G H673611311ORPHA:177245,X/46,XY mixed gonadal dysgenesisHP:0040283 - Occasional23
HP:0001328HP:0010522Dyslexia1STIM1 CL E G H678611386OMIM:185070Stormorken syndrome.31
HP:0001328HP:0002442Dyscalculia1TARDBP CL E G H2343511571ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent65
HP:0001328HP:0002442Dyscalculia1TBK1 CL E G H2911011584ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent20
HP:0001328HP:0010522Dyslexia1TCF12 CL E G H693811623OMIM:619718HYPOGONADOTROPIC HYPOGONADISM 26 WITH OR WITHOUT ANOSMIA; HH2628
HP:0001328HP:0010522Dyslexia1TMEM106B CL E G H5466422407ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent
HP:0001328HP:0002442Dyscalculia1TMEM106B CL E G H5466422407ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent
HP:0001328HP:0010522Dyslexia1TMEM106B CL E G H5466422407ORPHA:100069Semantic dementiaHP:0040282 - Frequent
HP:0001328HP:0002442Dyscalculia1TREM2 CL E G H5420917761ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent31
HP:0001328HP:0010522Dyslexia1TREM2 CL E G H5420917761ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent31
HP:0001328HP:0010522Dyslexia1TREM2 CL E G H5420917761ORPHA:100069Semantic dementiaHP:0040282 - Frequent31
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNF CL E G H45587481ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNH CL E G H45647487ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNL1 CL E G H45677490ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNQ CL E G H45727495ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNS1 CL E G H45747497ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNS2 CL E G H45757498ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010794Impaired visuospatial constructive cognition1TRNW CL E G H45787501ORPHA:550MELASHP:0040282 - Frequent
HP:0001328HP:0010522Dyslexia1TUBG1 CL E G H728312417ORPHA:26118315q11.2 microdeletion syndromeHP:0040282 - Frequent14
HP:0001328HP:0010522Dyslexia1VCP CL E G H741512666ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent63
HP:0001328HP:0002442Dyscalculia1VCP CL E G H741512666ORPHA:275864Behavioral variant of frontotemporal dementiaHP:0040281 - Very frequent63
HP:0001328HP:0002442Dyscalculia1VCP CL E G H741512666ORPHA:275872Frontotemporal dementia with motor neuron diseaseHP:0040282 - Frequent63
HP:0001328HP:0002442Dyscalculia1VCP CL E G H741512666ORPHA:52430Inclusion body myopathy with Paget disease of bone and frontotemporal dementiaHP:0040283 - Occasional63
HP:0001328HP:0010522Dyslexia1VPS13D CL E G H5518723595ORPHA:95434Autosomal recessive cerebellar ataxia-movement disorder syndromeHP:0040282 - Frequent
HP:0001328HP:0010522Dyslexia1VPS41 CL E G H2707212713ORPHA:95434Autosomal recessive cerebellar ataxia-movement disorder syndromeHP:0040282 - Frequent


Genes (288) :ABCD1 ACTB ACTG1 ADGRG1 AFF2 ALDH18A1 ALDOA ALMS1 AMACR AMER1 APC APC2 ARL6 ARVCF ARX ASPA ATP7A AUTS2 B3GALNT2 B4GAT1 BBS1 BLM BPTF C9ORF72 CA2 CACNA1A CACNA1H CCDC28B CDC45 CDC6 CDON CDT1 CHCHD10 CHMP2B CHRNA7 CHSY1 CKAP2L CLTCL1 CNKSR2 COL4A1 COMT COQ2 COX1 COX2 COX3 COX7B CRPPA CYLD CYP27A1 DAG1 DARS2 DCC DGCR2 DGCR6 DGCR8 DIS3L2 DISP1 DLL1 DMD DNAAF4 DNAJC21 DNAL4 DPYD DVL1 DVL3 EHMT1 ELN ESS2 EXTL3 FANCF FARSB FBXW7 FGF8 FGFR1 FIBP FKRP FKTN FLT4 FMR1 FOXH1 FOXP2 FRMD5 FUS FZD2 GABRA1 GABRB3 GABRG2 GALT GAS1 GCLC GDI1 GJC2 GLI2 GLUD1 GMNN GNPTAB GP1BB GRB10 GRIA3 GRIN2A GRN H19 HAL HCCS HDAC8 HERC2 HINT1 HIRA HMGA2 HNRNPA1 HNRNPA2B1 HTT IFNG IGF2 INPP5K IPW IRF6 JAG1 JMJD1C JRK KAT6B KCNA1 KCNC3 KCNJ2 KCNJ5 KIF11 KIFBP KLF13 LARGE1 LAS1L LEMD3 LTBP1 LTBP4 LYST MAGEL2 MAN2B1 MAP1B MAP2K2 MAPT MBTPS2 MED13L MICU1 MID1 MKRN3 MKRN3-AS1 MLXIPL MORC2 MSX1 MTHFR MTOR MYCN MYO5A ND1 ND4 ND5 ND6 NDN NDUFB11 NECTIN1 NF1 NIPA1 NIPA2 NODAL NOTCH3 NPAP1 NSD1 NTN1 NTRK1 OCA2 OPA3 ORC1 ORC4 ORC6 PAPPA2 PDE4D PI4KA PIEZO2 PIGH PIK3C2A PLA2G6 PLCH1 PMPCA PNKP POMGNT1 POMGNT2 POMK POMT1 POMT2 PRKAR1A PRKAR1B PRMT7 PRNP PRRT2 PSEN1 PSMD12 PTCH1 PTDSS1 PWAR1 PWRN1 RAD51 RDH11 RNF168 RNU4ATAC RPS23 RREB1 RXYLT1 SARDH SBDS SBF2 SC5D SEC24C SETD2 SH2B1 SHH SIL1 SIM1 SIX3 SIX6 SLC25A15 SLC2A1 SLC2A10 SLC2A3 SMAD4 SMARCA2 SMC1A SMPD1 SNORD115-1 SNORD116-1 SNRPN SOX2 SPART SPG11 SPG7 SPRED1 SPTBN1 SQSTM1 SRP54 SRPX2 SRY STAG2 STIL STIM1 SUGCT SYN1 TARDBP TBK1 TBX1 TCF12 TCF4 TCTN3 TDGF1 TERC TERT TGIF1 THOC6 TINF2 TMEM106B TMEM63A TMEM94 TP63 TREM2 TRIO TRNF TRNH TRNL1 TRNQ TRNS1 TRNS2 TRNW TSC1 TSC2 TUBB2B TUBB3 TUBB4A TUBG1 TWNK UBE3B UFD1 VCP VPS13D VPS41 WAS WDR1 WIPF1 WNT5A YY1AP1 ZFYVE26 ZIC2

Diseases (190) :ORPHA:139396 ORPHA:2995 ORPHA:98889 ORPHA:100973 OMIM:601162 ORPHA:57 ORPHA:64 ORPHA:79095 ORPHA:2780 ORPHA:261584 ORPHA:821 OMIM:209900 ORPHA:567 OMIM:300215 ORPHA:314918 ORPHA:198 ORPHA:352490 ORPHA:899 OMIM:210900 ORPHA:529962 OMIM:105550 ORPHA:275864 ORPHA:275872 ORPHA:100069 ORPHA:2785 OMIM:141500 ORPHA:64280 ORPHA:2554 ORPHA:93925 ORPHA:93924 ORPHA:93926 ORPHA:220386 ORPHA:280195 OMIM:600795 OMIM:612001 ORPHA:363417 ORPHA:3255 ORPHA:453510 OMIM:301008 OMIM:607426 ORPHA:550 ORPHA:2556 OMIM:619132 ORPHA:909 ORPHA:137898 ORPHA:238722 OMIM:192430 ORPHA:2849 ORPHA:98896 OMIM:127700 OMIM:260400 ORPHA:1675 ORPHA:3107 ORPHA:96147 OMIM:194050 ORPHA:508533 OMIM:603467 OMIM:613658 OMIM:620012 ORPHA:500095 ORPHA:79452 ORPHA:449291 ORPHA:209908 OMIM:620094 ORPHA:1945 ORPHA:79239 ORPHA:33574 OMIM:300849 ORPHA:35878 OMIM:252600 ORPHA:96182 ORPHA:364028 ORPHA:289266 ORPHA:163721 ORPHA:231144 ORPHA:2157 ORPHA:3459 OMIM:176270 ORPHA:324442 ORPHA:94063 ORPHA:52430 ORPHA:399 ORPHA:805 OMIM:613254 ORPHA:559 ORPHA:1300 ORPHA:199302 OMIM:118450 ORPHA:3047 ORPHA:37612 ORPHA:98768 OMIM:170390 ORPHA:37553 ORPHA:2526 ORPHA:66629 OMIM:619451 ORPHA:167 ORPHA:398069 ORPHA:98754 ORPHA:177901 ORPHA:177904 ORPHA:309282 OMIM:618918 ORPHA:638 ORPHA:240085 ORPHA:2273 ORPHA:369891 OMIM:615673 ORPHA:2745 ORPHA:466768 ORPHA:395 ORPHA:457485 OMIM:164280 ORPHA:391641 ORPHA:33445 ORPHA:97685 ORPHA:363700 OMIM:162200 OMIM:601321 ORPHA:261183 ORPHA:136 ORPHA:228415 ORPHA:642 ORPHA:67036 OMIM:619489 ORPHA:280651 ORPHA:2461 OMIM:618010 ORPHA:557003 ORPHA:199351 ORPHA:1170 ORPHA:459033 ORPHA:86812 ORPHA:206559 ORPHA:412066 ORPHA:464288 ORPHA:280397 ORPHA:98811 ORPHA:2658 ORPHA:436245 ORPHA:420741 ORPHA:2636 OMIM:617412 ORPHA:3129 ORPHA:99956 ORPHA:46059 ORPHA:261197 OMIM:147250 ORPHA:171829 ORPHA:398079 OMIM:206900 ORPHA:415 OMIM:238970 OMIM:606777 ORPHA:3342 ORPHA:2588 ORPHA:3051 ORPHA:77293 ORPHA:101000 ORPHA:2822 OMIM:604360 ORPHA:99013 OMIM:611431 ORPHA:137605 OMIM:619475 ORPHA:1772 OMIM:185070 ORPHA:35706 OMIM:300491 ORPHA:85294 OMIM:188400 OMIM:619718 ORPHA:2896 ORPHA:2753 OMIM:127550 ORPHA:363444 OMIM:618688 OMIM:618316 ORPHA:476126 OMIM:191100 OMIM:610031 OMIM:600638 OMIM:612438 OMIM:271245 ORPHA:2707 ORPHA:95434 ORPHA:906 OMIM:150550 ORPHA:79094 ORPHA:100996
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.