Input | HPO ID | HPO term | Distance | Gene | Gene id entrez | HGNC ID | DiseaseId | DiseaseName | Frequency | Onset | HGMD variants | ClinVar variants |
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HPO disease - gene - phenotype typical associations: |
HPO disease - gene - phenotype less frequent non-typical associations: |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | AFF3 CL E G H | 3899 | 6473 | OMIM:619297 | KINSSHIP SYNDROME; KINS | | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | ARHGEF2 CL E G H | 9181 | 682 | OMIM:617523 | Neurodevelopmental disorder with midbrain and hindbrain malformations | | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CDK5RAP2 CL E G H | 55755 | 18672 | OMIM:604804 | Microcephaly 3, primary, autosomal recessive | | | | 181 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CENPE CL E G H | 1062 | 1856 | OMIM:616051 | Microcephaly 13, primary, autosomal recessive | | | | 20 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CEP63 CL E G H | 80254 | 25815 | OMIM:614728 | Seckel syndrome 6 | | | | 31 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CLPB CL E G H | 81570 | 30664 | ORPHA:445038 | 3-methylglutaconic aciduria type 7 | HP:0040281 - Very frequent | | | 38 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | COG7 CL E G H | 91949 | 18622 | ORPHA:79333 | COG7-CDG | | | | 64 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CTNNB1 CL E G H | 1499 | 2514 | OMIM:615075 | Neurodevelopmental disorder with spastic diplegia and visual defects | | | | 88 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | CTNNB1 CL E G H | 1499 | 2514 | ORPHA:404473 | Severe intellectual disability-progressive spastic diplegia syndrome | HP:0040282 - Frequent | | | 88 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | DISC1 CL E G H | 27185 | 2888 | ORPHA:171703 | Microcephaly-polymicrogyria-corpus callosum agenesis syndrome | HP:0040282 - Frequent | | | 2 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | DTYMK CL E G H | 1841 | 3061 | OMIM:619847 | | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | EIF5A CL E G H | 1984 | 3300 | OMIM:619376 | FAUNDES-BANKA SYNDROME; FABAS | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | EOMES CL E G H | 8320 | 3372 | ORPHA:171703 | Microcephaly-polymicrogyria-corpus callosum agenesis syndrome | HP:0040282 - Frequent | | | 7 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | FIG4 CL E G H | 9896 | 16873 | ORPHA:3472 | Yunis-Varon syndrome | HP:0040282 - Frequent | | | 111 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | FRMD4A CL E G H | 55691 | 25491 | OMIM:616819 | Corpus callosum, agenesis of, with facial anomalies and cerebellar ataxia | | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | FRMD4A CL E G H | 55691 | 25491 | ORPHA:466688 | Severe intellectual disability-corpus callosum agenesis-facial dysmorphism-cerebellar ataxia syndrome | HP:0040282 - Frequent | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | GRIN2A CL E G H | 2903 | 4585 | ORPHA:289266 | Early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutation | HP:0040283 - Occasional | | | 434 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | GRIN2A CL E G H | 2903 | 4585 | OMIM:245570 | EPILEPSY, FOCAL, WITH SPEECH DISORDER AND WITH OR WITHOUT MENTAL RETARDATION; FESD | | | | 434 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | IFIH1 CL E G H | 64135 | 18873 | OMIM:615846 | Aicardi-Goutieres syndrome 7 | | | | 28 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | KAT6A CL E G H | 7994 | 13013 | OMIM:616268 | Arboleda-Tham syndrome | | | | 34 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | KATNB1 CL E G H | 10300 | 6217 | ORPHA:89844 | Lissencephaly syndrome, Norman-Roberts type | HP:0040281 - Very frequent | | | 10 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | LMNB2 CL E G H | 84823 | 6638 | OMIM:619180 | MICROCEPHALY 27, PRIMARY, AUTOSOMAL DOMINANT; MCPH27 | | | | 11 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | MECP2 CL E G H | 4204 | 6990 | ORPHA:778 | Rett syndrome | HP:0040284 - Very rare | | | 950 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | NDE1 CL E G H | 54820 | 17619 | ORPHA:2177 | Hydranencephaly | HP:0040283 - Occasional | | | 96 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | NDE1 CL E G H | 54820 | 17619 | OMIM:614019 | Lissencephaly 4 | | | | 96 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | NDE1 CL E G H | 54820 | 17619 | ORPHA:89844 | Lissencephaly syndrome, Norman-Roberts type | HP:0040281 - Very frequent | | | 96 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | NSF CL E G H | 4905 | 8016 | OMIM:619340 | DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 96; DEE96 | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | NUP188 CL E G H | 23511 | 17859 | OMIM:618804 | SANDESTIG-STEFANOVA SYNDROME; SANDSTEF | | | | 4 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PDCD6IP CL E G H | 10015 | 8766 | OMIM:620047 | | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PHGDH CL E G H | 26227 | 8923 | ORPHA:79351 | 3-phosphoglycerate dehydrogenase deficiency, infantile/juvenile form | HP:0040282 - Frequent | | | 37 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PHGDH CL E G H | 26227 | 8923 | OMIM:601815 | Phosphoglycerate dehydrogenase deficiency | . | | | 37 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PIGH CL E G H | 5283 | 8964 | OMIM:618010 | Glycosylphosphatidylinositol biosynthesis defect 17 | | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PPFIBP1 CL E G H | 8496 | 9249 | OMIM:620024 | | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PPP1R15B CL E G H | 84919 | 14951 | ORPHA:391408 | Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome | HP:0040281 - Very frequent | | | 2 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | PSAT1 CL E G H | 29968 | 19129 | ORPHA:284417 | Phosphoserine aminotransferase deficiency, infantile/juvenile form | HP:0040281 - Very frequent | | | 27 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | RBBP8 CL E G H | 5932 | 9891 | OMIM:251255 | Jawad syndrome | | | | 68 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | RELN CL E G H | 5649 | 9957 | ORPHA:89844 | Lissencephaly syndrome, Norman-Roberts type | HP:0040281 - Very frequent | | | 334 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | RNF2 CL E G H | 6045 | 10061 | OMIM:619460 | LUO-SCHOCH-YAMAMOTO SYNDROME; LUSYAM | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SLC16A2 CL E G H | 6567 | 10923 | ORPHA:59 | Allan-Herndon-Dudley syndrome | HP:0040284 - Very rare | | | 57 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SLC1A4 CL E G H | 6509 | 10942 | ORPHA:447997 | Spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome | HP:0040282 - Frequent | | | 4 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SLC25A12 CL E G H | 8604 | 10982 | OMIM:612949 | Epileptic encephalopathy, early infantile, 39 | | | | 44 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SMC3 CL E G H | 9126 | 2468 | OMIM:610759 | Cornelia de Lange syndrome 3 | | | | 91 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SPATA5 CL E G H | 166378 | 18119 | ORPHA:457351 | Microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome | HP:0040283 - Occasional | | | 19 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | SPOP CL E G H | 8405 | 11254 | OMIM:618828 | NABAIS SA-DE VRIES SYNDROME, TYPE 1; NSDVS1 | | | | 16 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | STIL CL E G H | 6491 | 10879 | OMIM:612703 | Microcephaly 7, primary, autosomal recessive | | | | 99 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TBCD CL E G H | 6904 | 11581 | ORPHA:496641 | Early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome | HP:0040283 - Occasional | | | 16 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TBL1XR1 CL E G H | 79718 | 29529 | ORPHA:487825 | Pierpont syndrome | HP:0040282 - Frequent | | | 22 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TELO2 CL E G H | 9894 | 29099 | ORPHA:488642 | TELO2-related intellectual disability-neurodevelopmental disorder | HP:0040281 - Very frequent | | | 12 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TPRKB CL E G H | 51002 | 24259 | OMIM:617731 | Galloway-Mowat syndrome 5 | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TRAPPC12 CL E G H | 51112 | 24284 | ORPHA:500144 | Early-onset progressive encephalopathy-hearing loss-pons hypoplasia-brain atrophy syndrome | HP:0040282 - Frequent | | | 2 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TRAPPC14 CL E G H | 55262 | 25604 | OMIM:618351 | Microcephaly 25, primary, autosomal recessive | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TRIO CL E G H | 7204 | 12303 | ORPHA:476126 | Micrognathia-recurrent infections-behavioral abnormalities-mild intellectual disability syndrome | HP:0040282 - Frequent | | | 8 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TRMT10A CL E G H | 93587 | 28403 | OMIM:616033 | Microcephaly, short stature, and impaired glucose metabolism 1 | | | | 7 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TRMT10A CL E G H | 93587 | 28403 | ORPHA:391408 | Primary microcephaly-mild intellectual disability-young-onset diabetes syndrome | HP:0040281 - Very frequent | | | 7 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TSEN54 CL E G H | 283989 | 27561 | ORPHA:166063 | Pontocerebellar hypoplasia type 4 | HP:0040282 - Frequent | | | 102 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TUBB CL E G H | 203068 | 20778 | OMIM:615771 | Cortical dysplasia, complex, with other brain malformations 6 | | | | 14 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TUBB3 CL E G H | 10381 | 20772 | ORPHA:300570 | Cortical dysgenesis with pontocerebellar hypoplasia due to TUBB3 mutation | HP:0040283 - Occasional | | | 64 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | TXN2 CL E G H | 25828 | 17772 | ORPHA:478029 | Combined oxidative phosphorylation defect type 29 | HP:0040281 - Very frequent | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | VAC14 CL E G H | 55697 | 25507 | ORPHA:3472 | Yunis-Varon syndrome | HP:0040282 - Frequent | | | 6 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | VPS4A CL E G H | 27183 | 13488 | OMIM:619273 | CIMDAG SYNDROME; CIMDAG | | | | 1 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | YRDC CL E G H | 79693 | 28905 | OMIM:619609 | GALLOWAY-MOWAT SYNDROME 10; GAMOS10 | | | | | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | ZEB2 CL E G H | 9839 | 14881 | ORPHA:261552 | Mowat-Wilson syndrome due to a ZEB2 point mutation | HP:0040283 - Occasional | | | 362 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | ZEB2 CL E G H | 9839 | 14881 | ORPHA:261537 | Mowat-Wilson syndrome due to monosomy 2q22 | HP:0040283 - Occasional | | | 362 | | |
HP:0011451 | HP:0011451 | Primary microcephaly | 0 | ZNF335 CL E G H | 63925 | 15807 | OMIM:615095 | Microcephaly 10, primary, autosomal recessive | | | | 60 | | |