Human Phenotype Ontology 
Grandparent Node:
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Morphological central nervous system abnormality (HP:0002011)help
Parent Node:
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Abnormal meningeal morphology (HP:0010651)help
..Starting node
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Abnormal arachnoid mater morphology (HP:0100700)help
Term ID: 100700
Name: Abnormal arachnoid mater morphology
Synonym: Abnormality of the arachnoid mater; Abnormality of the arachnoidea
Definition: An abnormality of the Arachnoid mater.
Comments:
Reference: HP:0100700
Genes and Diseases:
 
       Child Nodes:
........expandArachnoid cyst (HP:0100702) help
................... HP:0009745 Spinalarachnoid cyst
................... HP:0012487 Cerebellopontine angle arachnoid cyst
................... HP:0012488 Intraventricular arachnoid cyst
................... HP:0012489 Suprasellar arachnoid cyst

 Sister Nodes: 
..expandAbnormal dura mater morphology (HP:0010652) help
..expandAbnormal pia mater (HP:0100701) help
..expandAbnormal spinal meningeal morphology (HP:0010303) help
..expandMeningeal calcification (HP:0100250) help
..expandMeningocele (HP:0002435) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ADAT3 CL E G H11317925151ORPHA:363528Intellectual disability-strabismus syndrome9
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ADAT3 CL E G H11317925151OMIM:615286Mental retardation, autosomal recessive 369
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ALG5 CL E G H2988020266ORPHA:730Autosomal dominant polycystic kidney disease
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ALG9 CL E G H7979615672ORPHA:730Autosomal dominant polycystic kidney disease93
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ARID2 CL E G H19652818037OMIM:617808Coffin-siris syndrome 625
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ATP6AP1 CL E G H537868OMIM:300972IMMUNODEFICIENCY 47; IMD475
HP:0100700HP:0100700Abnormal arachnoid mater morphology0BICC1 CL E G H8011419351ORPHA:730Autosomal dominant polycystic kidney disease5
HP:0100700HP:0100700Abnormal arachnoid mater morphology0CPLANE1 CL E G H6525025801OMIM:277170Orofaciodigital syndrome VI
HP:0100700HP:0100700Abnormal arachnoid mater morphology0DHCR7 CL E G H17172860OMIM:270400Smith-Lemli-Opitz syndrome159
HP:0100700HP:0100700Abnormal arachnoid mater morphology0DNAJB11 CL E G H5172614889ORPHA:730Autosomal dominant polycystic kidney disease
HP:0100700HP:0100700Abnormal arachnoid mater morphology0DNAJC19 CL E G H13111830528ORPHA:66634Dilated cardiomyopathy with ataxia25
HP:0100700HP:0100700Abnormal arachnoid mater morphology0EBP CL E G H106823133ORPHA:35173X-linked dominant chondrodysplasia punctata51
HP:0100700HP:0100700Abnormal arachnoid mater morphology0FGFR1 CL E G H22603688OMIM:613001Encephalocraniocutaneous lipomatosis172
HP:0100700HP:0100700Abnormal arachnoid mater morphology0FGFR2 CL E G H22633689OMIM:101200Apert syndrome175
HP:0100700HP:0100700Abnormal arachnoid mater morphology0FOXC2 CL E G H23033801ORPHA:33001Lymphedema-distichiasis syndrome20
HP:0100700HP:0100700Abnormal arachnoid mater morphology0GANAB CL E G H231934138ORPHA:730Autosomal dominant polycystic kidney disease6
HP:0100700HP:0100700Abnormal arachnoid mater morphology0GPSM2 CL E G H2989929501OMIM:604213CHUDLEY-MCCULLOUGH SYNDROME; CMCS74
HP:0100700HP:0100700Abnormal arachnoid mater morphology0HRAS CL E G H32655173ORPHA:2874Phakomatosis pigmentokeratotica113
HP:0100700HP:0100700Abnormal arachnoid mater morphology0IFT140 CL E G H974229077ORPHA:730Autosomal dominant polycystic kidney disease148
HP:0100700HP:0100700Abnormal arachnoid mater morphology0KCNC2 CL E G H37476234OMIM:619913
HP:0100700HP:0100700Abnormal arachnoid mater morphology0KRAS CL E G H38456407OMIM:600268Oculoectodermal syndrome196
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NARS1 CL E G H46777643OMIM:619091NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, IMPAIRED LANGUAGE, AND GAIT ABNORMALITIES; NEDMILG
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NEK1 CL E G H47507744ORPHA:2751Orofaciodigital syndrome type 2101
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NOTCH3 CL E G H48547883OMIM:130720Lateral meningocele syndrome144
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NRAS CL E G H48937989OMIM:249400Neurocutaneous melanosis, somatic102
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NRCAM CL E G H48977994OMIM:6198332
HP:0100700HP:0100700Abnormal arachnoid mater morphology0NSD1 CL E G H6432414234OMIM:117550Sotos syndrome 1544
HP:0100700HP:0100700Abnormal arachnoid mater morphology0OFD1 CL E G H84812567OMIM:311200Orofaciodigital syndrome I201
HP:0100700HP:0100700Abnormal arachnoid mater morphology0OTUD5 CL E G H5559325402OMIM:301056MULTIPLE CONGENITAL ANOMALIES-NEURODEVELOPMENTAL SYNDROME, X-LINKED; MCAND
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PI4KA CL E G H52978983OMIM:619621SPASTIC PARAPLEGIA 84, AUTOSOMAL RECESSIVE; SPG8411
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PKD1 CL E G H53109008ORPHA:730Autosomal dominant polycystic kidney disease342
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PKD2 CL E G H53119009ORPHA:730Autosomal dominant polycystic kidney disease106
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PPP2R5D CL E G H55289312ORPHA:457279Intellectual disability-macrocephaly-hypotonia-behavioral abnormalities syndrome10
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PUF60 CL E G H2282717042ORPHA:508498Intellectual disability-cardiac anomalies-short stature-joint laxity syndrome19
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PUS3 CL E G H8348025461OMIM:617051MENTAL RETARDATION, AUTOSOMAL RECESSIVE 55; MRT551
HP:0100700HP:0100700Abnormal arachnoid mater morphology0PUS3 CL E G H8348025461ORPHA:488627Severe growth deficiency-strabismus-extensive dermal melanocytosis-intellectual disability syndrome1
HP:0100700HP:0100700Abnormal arachnoid mater morphology0RAB3GAP2 CL E G H2578217168OMIM:212720Martsolf syndrome 1135
HP:0100700HP:0100700Abnormal arachnoid mater morphology0RNU4ATAC CL E G H10015168334016OMIM:210710Microcephalic osteodysplastic primordial dwarfism, type I15
HP:0100700HP:0100700Abnormal arachnoid mater morphology0RTTN CL E G H2591418654ORPHA:468631Microcephalic cortical malformations-short stature due to RTTN deficiency113
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SACS CL E G H2627810519ORPHA:98Autosomal recessive spastic ataxia of Charlevoix-Saguenay309
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SCN1A CL E G H632310585OMIM:619317DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 6B; DEE6B1053
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SCN2A CL E G H632610588OMIM:618924EPISODIC ATAXIA, TYPE 9; EA9427
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SH2B1 CL E G H2597030417ORPHA:261197Proximal 16p11.2 microdeletion syndrome
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SHANK3 CL E G H8535814294ORPHA:48652Monosomy 22q13.353
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SHANK3 CL E G H8535814294OMIM:606232Phelan-Mcdermid syndrome53
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SLC30A9 CL E G H104631329OMIM:617595Birk-Landau-Perez syndrome1
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SON CL E G H665111183ORPHA:500150Brain malformations-musculoskeletal abnormalities-facial dysmorphism-intellectual disability syndrome12
HP:0100700HP:0100700Abnormal arachnoid mater morphology0SON CL E G H665111183OMIM:617140Zttk syndrome12
HP:0100700HP:0100700Abnormal arachnoid mater morphology0STT3A CL E G H37036172OMIM:619714CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Iw, AUTOSOMAL DOMINANT; CDG1WAD21
HP:0100700HP:0100700Abnormal arachnoid mater morphology0TMEM231 CL E G H7958337234ORPHA:2752Orofaciodigital syndrome type 333
HP:0100700HP:0100700Abnormal arachnoid mater morphology0WAC CL E G H5132217327ORPHA:466950Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutation20
HP:0100700HP:0100700Abnormal arachnoid mater morphology0WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS
HP:0100700HP:0100700Abnormal arachnoid mater morphology0XPNPEP3 CL E G H6392928052OMIM:613159Nephronophthisis-Like nephropathy 1109
HP:0100700HP:0100700Abnormal arachnoid mater morphology0ZNFX1 CL E G H5716929271OMIM:619644IMMUNODEFICIENCY 91 AND HYPERINFLAMMATION; IMD91
HP:0100700HP:0034454Arachnoid granulation1 CL E G H
HP:0100700HP:0100702Arachnoid cyst1ADAT3 CL E G H11317925151ORPHA:363528Intellectual disability-strabismus syndromeHP:0040284 - Very rare9
HP:0100700HP:0100702Arachnoid cyst1ADAT3 CL E G H11317925151OMIM:615286Mental retardation, autosomal recessive 369
HP:0100700HP:0100702Arachnoid cyst1ALG5 CL E G H2988020266ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional
HP:0100700HP:0100702Arachnoid cyst1ALG9 CL E G H7979615672ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional93
HP:0100700HP:0100702Arachnoid cyst1ARID2 CL E G H19652818037OMIM:617808Coffin-siris syndrome 625
HP:0100700HP:0100702Arachnoid cyst1ATP6AP1 CL E G H537868OMIM:300972IMMUNODEFICIENCY 47; IMD475
HP:0100700HP:0100702Arachnoid cyst1BICC1 CL E G H8011419351ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional5
HP:0100700HP:0100702Arachnoid cyst1CPLANE1 CL E G H6525025801OMIM:277170Orofaciodigital syndrome VI
HP:0100700HP:0100702Arachnoid cyst1DHCR7 CL E G H17172860OMIM:270400Smith-Lemli-Opitz syndrome159
HP:0100700HP:0100702Arachnoid cyst1DNAJB11 CL E G H5172614889ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional
HP:0100700HP:0100702Arachnoid cyst1DNAJC19 CL E G H13111830528ORPHA:66634Dilated cardiomyopathy with ataxiaHP:0040284 - Very rare25
HP:0100700HP:0100702Arachnoid cyst1EBP CL E G H106823133ORPHA:35173X-linked dominant chondrodysplasia punctata51
HP:0100700HP:0100702Arachnoid cyst1FGFR1 CL E G H22603688OMIM:613001Encephalocraniocutaneous lipomatosis.172
HP:0100700HP:0100702Arachnoid cyst1FGFR2 CL E G H22633689OMIM:101200Apert syndrome.175
HP:0100700HP:0100702Arachnoid cyst1FOXC2 CL E G H23033801ORPHA:33001Lymphedema-distichiasis syndrome20
HP:0100700HP:0100702Arachnoid cyst1GANAB CL E G H231934138ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional6
HP:0100700HP:0100702Arachnoid cyst1GPSM2 CL E G H2989929501OMIM:604213CHUDLEY-MCCULLOUGH SYNDROME; CMCS74
HP:0100700HP:0100702Arachnoid cyst1HRAS CL E G H32655173ORPHA:2874Phakomatosis pigmentokeratotica113
HP:0100700HP:0100702Arachnoid cyst1IFT140 CL E G H974229077ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional148
HP:0100700HP:0100702Arachnoid cyst1KCNC2 CL E G H37476234OMIM:619913
HP:0100700HP:0100702Arachnoid cyst1KRAS CL E G H38456407OMIM:600268Oculoectodermal syndromeHP:0040283 - Occasional196
HP:0100700HP:0100702Arachnoid cyst1NARS1 CL E G H46777643OMIM:619091NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, IMPAIRED LANGUAGE, AND GAIT ABNORMALITIES; NEDMILG
HP:0100700HP:0100702Arachnoid cyst1NEK1 CL E G H47507744ORPHA:2751Orofaciodigital syndrome type 2HP:0040283 - Occasional101
HP:0100700HP:0100702Arachnoid cyst1NOTCH3 CL E G H48547883OMIM:130720Lateral meningocele syndrome.144
HP:0100700HP:0100702Arachnoid cyst1NRAS CL E G H48937989OMIM:249400Neurocutaneous melanosis, somaticHP:0040283 - Occasional102
HP:0100700HP:0100702Arachnoid cyst1NRCAM CL E G H48977994OMIM:6198332
HP:0100700HP:0100702Arachnoid cyst1NSD1 CL E G H6432414234OMIM:117550Sotos syndrome 1544
HP:0100700HP:0100702Arachnoid cyst1OFD1 CL E G H84812567OMIM:311200Orofaciodigital syndrome I.201
HP:0100700HP:0100702Arachnoid cyst1OTUD5 CL E G H5559325402OMIM:301056MULTIPLE CONGENITAL ANOMALIES-NEURODEVELOPMENTAL SYNDROME, X-LINKED; MCAND
HP:0100700HP:0100702Arachnoid cyst1PI4KA CL E G H52978983OMIM:619621SPASTIC PARAPLEGIA 84, AUTOSOMAL RECESSIVE; SPG8411
HP:0100700HP:0100702Arachnoid cyst1PKD1 CL E G H53109008ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional342
HP:0100700HP:0100702Arachnoid cyst1PKD2 CL E G H53119009ORPHA:730Autosomal dominant polycystic kidney diseaseHP:0040283 - Occasional106
HP:0100700HP:0100702Arachnoid cyst1PPP2R5D CL E G H55289312ORPHA:457279Intellectual disability-macrocephaly-hypotonia-behavioral abnormalities syndromeHP:0040283 - Occasional10
HP:0100700HP:0100702Arachnoid cyst1PUF60 CL E G H2282717042ORPHA:508498Intellectual disability-cardiac anomalies-short stature-joint laxity syndrome19
HP:0100700HP:0100702Arachnoid cyst1PUS3 CL E G H8348025461OMIM:617051MENTAL RETARDATION, AUTOSOMAL RECESSIVE 55; MRT551
HP:0100700HP:0100702Arachnoid cyst1PUS3 CL E G H8348025461ORPHA:488627Severe growth deficiency-strabismus-extensive dermal melanocytosis-intellectual disability syndromeHP:0040283 - Occasional1
HP:0100700HP:0100702Arachnoid cyst1RAB3GAP2 CL E G H2578217168OMIM:212720Martsolf syndrome 1135
HP:0100700HP:0100702Arachnoid cyst1RNU4ATAC CL E G H10015168334016OMIM:210710Microcephalic osteodysplastic primordial dwarfism, type I15
HP:0100700HP:0100702Arachnoid cyst1RTTN CL E G H2591418654ORPHA:468631Microcephalic cortical malformations-short stature due to RTTN deficiencyHP:0040283 - Occasional113
HP:0100700HP:0100702Arachnoid cyst1SACS CL E G H2627810519ORPHA:98Autosomal recessive spastic ataxia of Charlevoix-SaguenayHP:0040282 - Frequent309
HP:0100700HP:0100702Arachnoid cyst1SCN1A CL E G H632310585OMIM:619317DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 6B; DEE6B1053
HP:0100700HP:0100702Arachnoid cyst1SCN2A CL E G H632610588OMIM:618924EPISODIC ATAXIA, TYPE 9; EA9427
HP:0100700HP:0100702Arachnoid cyst1SH2B1 CL E G H2597030417ORPHA:261197Proximal 16p11.2 microdeletion syndromeHP:0040283 - Occasional
HP:0100700HP:0100702Arachnoid cyst1SHANK3 CL E G H8535814294ORPHA:48652Monosomy 22q13.3HP:0040283 - Occasional53
HP:0100700HP:0100702Arachnoid cyst1SHANK3 CL E G H8535814294OMIM:606232Phelan-Mcdermid syndrome53
HP:0100700HP:0100702Arachnoid cyst1SLC30A9 CL E G H104631329OMIM:617595Birk-Landau-Perez syndrome1
HP:0100700HP:0100702Arachnoid cyst1SON CL E G H665111183ORPHA:500150Brain malformations-musculoskeletal abnormalities-facial dysmorphism-intellectual disability syndromeHP:0040283 - Occasional12
HP:0100700HP:0100702Arachnoid cyst1SON CL E G H665111183OMIM:617140Zttk syndrome12
HP:0100700HP:0100702Arachnoid cyst1STT3A CL E G H37036172OMIM:619714CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Iw, AUTOSOMAL DOMINANT; CDG1WAD21
HP:0100700HP:0100702Arachnoid cyst1TMEM231 CL E G H7958337234ORPHA:2752Orofaciodigital syndrome type 333
HP:0100700HP:0100702Arachnoid cyst1WAC CL E G H5132217327ORPHA:466950Facial dysmorphism-developmental delay-behavioral abnormalities syndrome due to WAC point mutationHP:0040283 - Occasional20
HP:0100700HP:0100702Arachnoid cyst1WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS
HP:0100700HP:0100702Arachnoid cyst1XPNPEP3 CL E G H6392928052OMIM:613159Nephronophthisis-Like nephropathy 1HP:0040283 - Occasional109
HP:0100700HP:0100702Arachnoid cyst1ZNFX1 CL E G H5716929271OMIM:619644IMMUNODEFICIENCY 91 AND HYPERINFLAMMATION; IMD91
HP:0100700HP:0009745Spinal arachnoid cyst2FOXC2 CL E G H23033801ORPHA:33001Lymphedema-distichiasis syndromeHP:0040283 - Occasional20
HP:0100700HP:0012487Cerebellopontine angle arachnoid cyst2PUF60 CL E G H2282717042ORPHA:508498Intellectual disability-cardiac anomalies-short stature-joint laxity syndromeHP:0040283 - Occasional19
HP:0100700HP:0012489Suprasellar arachnoid cyst2TMEM231 CL E G H7958337234ORPHA:2752Orofaciodigital syndrome type 3HP:0040282 - Frequent33
HP:0100700HP:0012488Intraventricular arachnoid cyst2WLS CL E G H7997130238OMIM:619648ZAKI SYNDROME; ZKS


Genes (50) :ADAT3 ALG5 ALG9 ARID2 ATP6AP1 BICC1 CPLANE1 DHCR7 DNAJB11 DNAJC19 EBP FGFR1 FGFR2 FOXC2 GANAB GPSM2 HRAS IFT140 KCNC2 KRAS NARS1 NEK1 NOTCH3 NRAS NRCAM NSD1 OFD1 OTUD5 PI4KA PKD1 PKD2 PPP2R5D PUF60 PUS3 RAB3GAP2 RNU4ATAC RTTN SACS SCN1A SCN2A SH2B1 SHANK3 SLC30A9 SON STT3A TMEM231 WAC WLS XPNPEP3 ZNFX1

Diseases (47) :ORPHA:363528 OMIM:615286 ORPHA:730 OMIM:617808 OMIM:300972 OMIM:277170 OMIM:270400 ORPHA:66634 ORPHA:35173 OMIM:613001 OMIM:101200 ORPHA:33001 OMIM:604213 ORPHA:2874 OMIM:619913 OMIM:600268 OMIM:619091 ORPHA:2751 OMIM:130720 OMIM:249400 OMIM:619833 OMIM:117550 OMIM:311200 OMIM:301056 OMIM:619621 ORPHA:457279 ORPHA:508498 OMIM:617051 ORPHA:488627 OMIM:212720 OMIM:210710 ORPHA:468631 ORPHA:98 OMIM:619317 OMIM:618924 ORPHA:261197 ORPHA:48652 OMIM:606232 OMIM:617595 ORPHA:500150 OMIM:617140 OMIM:619714 ORPHA:2752 ORPHA:466950 OMIM:619648 OMIM:613159 OMIM:619644
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.