Human Phenotype Ontology 
Grandparent Node:
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Abnormal muscle fiber morphology (HP:0004303)help
Parent Node:
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Muscle fiber inclusion bodies (HP:0100299)help
..Starting node
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Muscle fiber cytoplasmatic inclusion bodies (HP:0100303)help
Term ID: 100303
Name: Muscle fiber cytoplasmatic inclusion bodies
Synonym: Muscle fiber cytoplasmic bodies; Muscle fibre cytoplasmatic inclusion bodies; Muscle fibre cytoplasmic bodies
Definition: The presence of inclusion bodies within the cytoplasm of muscle cells. Inclusion bodies are aggregates (deposits) or stainable material, usually misfolded proteins.
Comments:
Reference: HP:0100303
Genes and Diseases:
 
       Child Nodes:
........expandNemaline bodies (HP:0003798) help
........expandDesmin bodies (HP:0100300) help
........expandMuscle fiber tubular inclusions (HP:0100301) help
........expandMuscle fiber tubuloreticular inclusions (HP:0100302) help
........expandMuscle fiber hyaline bodies (HP:0100306) help

 Sister Nodes: 
..expandMuscle fiber actin filament accumulation (HP:0025200) help
..expandMuscle fiber intranuclear inclusion bodies (HP:0100304) help
InputHPO IDHPO termDistanceGeneGene id entrezHGNC IDDiseaseIdDiseaseNameFrequencyOnsetHGMD variantsClinVar variants
 
HPO disease - gene - phenotype typical associations:
 
HPO disease - gene - phenotype less frequent non-typical associations:
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129ORPHA:171439Childhood-onset nemaline myopathy96
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129ORPHA:171433Intermediate nemaline myopathy96
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129OMIM:161800Nemaline myopathy 396
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129ORPHA:171430Severe congenital nemaline myopathy96
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129ORPHA:171436Typical nemaline myopathy96
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ACTA1 CL E G H58129ORPHA:97240Zebra body myopathy96
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ALG14 CL E G H19985728287ORPHA:353327Congenital myasthenic syndromes with glycosylation defect12
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ALG2 CL E G H8536523159ORPHA:353327Congenital myasthenic syndromes with glycosylation defect46
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0CASQ1 CL E G H8441512ORPHA:2593Tubular aggregate myopathy5
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0CFL2 CL E G H10731875OMIM:610687Nemaline myopathy 735
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0CFL2 CL E G H10731875ORPHA:171436Typical nemaline myopathy35
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0DPAGT1 CL E G H17982995ORPHA:353327Congenital myasthenic syndromes with glycosylation defect38
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0DPAGT1 CL E G H17982995OMIM:614750Myasthenic syndrome, congenital, 13, with tubular aggregates38
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0FHL1 CL E G H22733702OMIM:300718Myopathy, reducing body, X-linked, childhood-onset68
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0FLNC CL E G H23183756OMIM:609524Filaminopathy, autosomal dominant.197
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0GFPT1 CL E G H26734241ORPHA:353327Congenital myasthenic syndromes with glycosylation defect128
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0GMPPB CL E G H2992522932ORPHA:353327Congenital myasthenic syndromes with glycosylation defect34
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KBTBD13 CL E G H39059437227ORPHA:171439Childhood-onset nemaline myopathy80
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KBTBD13 CL E G H39059437227OMIM:609273Nemaline myopathy 680
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL40 CL E G H13137730372OMIM:615348NEMALINE MYOPATHY 8; NEM828
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL40 CL E G H13137730372ORPHA:171430Severe congenital nemaline myopathy28
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL41 CL E G H1032416905ORPHA:171439Childhood-onset nemaline myopathy13
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL41 CL E G H1032416905ORPHA:171433Intermediate nemaline myopathy13
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL41 CL E G H1032416905ORPHA:171430Severe congenital nemaline myopathy13
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KLHL41 CL E G H1032416905ORPHA:171436Typical nemaline myopathy13
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0KY CL E G H33985526576OMIM:617114MYOPATHY, MYOFIBRILLAR, 7; MFM73
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0LMOD3 CL E G H562036649ORPHA:171430Severe congenital nemaline myopathy11
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0LMOD3 CL E G H562036649ORPHA:171436Typical nemaline myopathy11
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0MYH7 CL E G H46257577OMIM:255160Myopathy, myosin storage, autosomal recessive1269
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0MYO18B CL E G H8470018150OMIM:616549Klippel-Feil syndrome 4, autosomal recessive, with myopathy and facial dysmorphism5
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0MYOT CL E G H949912399OMIM:609200MYOTILINOPATHY.75
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0MYPN CL E G H8466523246ORPHA:171439Childhood-onset nemaline myopathy217
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0MYPN CL E G H8466523246OMIM:617336Nemaline myopathy 11, autosomal recessive217
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NDUFB3 CL E G H47097698OMIM:618246Mitochondrial complex I deficiency, nuclear type 259
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720OMIM:619334ARTHROGRYPOSIS MULTIPLEX CONGENITA 6; AMC6745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720ORPHA:171439Childhood-onset nemaline myopathy745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720ORPHA:399103Distal nebulin myopathy745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720ORPHA:171433Intermediate nemaline myopathy745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720OMIM:256030Nemaline myopathy 2, autosomal recessive745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720ORPHA:171430Severe congenital nemaline myopathy745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEB CL E G H47037720ORPHA:171436Typical nemaline myopathy745
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0NEFL CL E G H47477739OMIM:607684Charcot-Marie-Tooth disease, axonal, type 2E118
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0ORAI1 CL E G H8487625896ORPHA:2593Tubular aggregate myopathy19
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0PYROXD1 CL E G H7991226162OMIM:617258MYOPATHY, MYOFIBRILLAR, 8; MFM85
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0RYR1 CL E G H626110483OMIM:117000Central core disease1200
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0RYR1 CL E G H626110483ORPHA:597Central core disease1200
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0RYR1 CL E G H626110483ORPHA:98905Congenital multicore myopathy with external ophthalmoplegia1200
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0RYR1 CL E G H626110483OMIM:255320Minicore myopathy with external ophthalmoplegia1200
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0SMPX CL E G H2367611122OMIM:301075MYOPATHY, DISTAL, 7, ADULT-ONSET, X-LINKED; MPD712
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0STIM1 CL E G H678611386ORPHA:2593Tubular aggregate myopathy31
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TNNT1 CL E G H713811948OMIM:605355NEMALINE MYOPATHY 5; NEM537
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM2 CL E G H716912011ORPHA:171439Childhood-onset nemaline myopathy54
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM2 CL E G H716912011OMIM:609285Nemaline myopathy 454
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM2 CL E G H716912011ORPHA:171436Typical nemaline myopathy54
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM3 CL E G H717012012ORPHA:171439Childhood-onset nemaline myopathy108
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM3 CL E G H717012012ORPHA:171433Intermediate nemaline myopathy108
HP:0100303HP:0100303Muscle fiber cytoplasmatic inclusion bodies0TPM3 CL E G H717012012OMIM:609284Nemaline myopathy 1108
HP:0100303HP:0100302Muscle fiber tubuloreticular inclusions1 CL E G H
HP:0100303HP:0100300Desmin bodies1 CL E G H
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent96
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129ORPHA:171433Intermediate nemaline myopathyHP:0040281 - Very frequent96
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129OMIM:161800Nemaline myopathy 3.96
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129ORPHA:171430Severe congenital nemaline myopathyHP:0040282 - Frequent96
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional96
HP:0100303HP:0003798Nemaline bodies1ACTA1 CL E G H58129ORPHA:97240Zebra body myopathyHP:0040281 - Very frequent96
HP:0100303HP:0100301Muscle fiber tubular inclusions1ALG14 CL E G H19985728287ORPHA:353327Congenital myasthenic syndromes with glycosylation defectHP:0040282 - Frequent12
HP:0100303HP:0100301Muscle fiber tubular inclusions1ALG2 CL E G H8536523159ORPHA:353327Congenital myasthenic syndromes with glycosylation defectHP:0040282 - Frequent46
HP:0100303HP:0100301Muscle fiber tubular inclusions1CASQ1 CL E G H8441512ORPHA:2593Tubular aggregate myopathyHP:0040281 - Very frequent5
HP:0100303HP:0003798Nemaline bodies1CFL2 CL E G H10731875OMIM:610687Nemaline myopathy 735
HP:0100303HP:0003798Nemaline bodies1CFL2 CL E G H10731875ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional35
HP:0100303HP:0100301Muscle fiber tubular inclusions1DPAGT1 CL E G H17982995ORPHA:353327Congenital myasthenic syndromes with glycosylation defectHP:0040282 - Frequent38
HP:0100303HP:0100301Muscle fiber tubular inclusions1DPAGT1 CL E G H17982995OMIM:614750Myasthenic syndrome, congenital, 13, with tubular aggregates38
HP:0100303HP:0034320Muscle fiber intracytoplasmic reducing inclusion bodies1FHL1 CL E G H22733702OMIM:300718Myopathy, reducing body, X-linked, childhood-onset68
HP:0100303HP:0100301Muscle fiber tubular inclusions1GFPT1 CL E G H26734241ORPHA:353327Congenital myasthenic syndromes with glycosylation defectHP:0040282 - Frequent128
HP:0100303HP:0100301Muscle fiber tubular inclusions1GMPPB CL E G H2992522932ORPHA:353327Congenital myasthenic syndromes with glycosylation defectHP:0040282 - Frequent34
HP:0100303HP:0003798Nemaline bodies1KBTBD13 CL E G H39059437227ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent80
HP:0100303HP:0003798Nemaline bodies1KBTBD13 CL E G H39059437227OMIM:609273Nemaline myopathy 6.80
HP:0100303HP:0003798Nemaline bodies1KLHL40 CL E G H13137730372OMIM:615348NEMALINE MYOPATHY 8; NEM828
HP:0100303HP:0003798Nemaline bodies1KLHL40 CL E G H13137730372ORPHA:171430Severe congenital nemaline myopathyHP:0040282 - Frequent28
HP:0100303HP:0003798Nemaline bodies1KLHL41 CL E G H1032416905ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent13
HP:0100303HP:0003798Nemaline bodies1KLHL41 CL E G H1032416905ORPHA:171433Intermediate nemaline myopathyHP:0040281 - Very frequent13
HP:0100303HP:0003798Nemaline bodies1KLHL41 CL E G H1032416905ORPHA:171430Severe congenital nemaline myopathyHP:0040282 - Frequent13
HP:0100303HP:0003798Nemaline bodies1KLHL41 CL E G H1032416905ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional13
HP:0100303HP:0003798Nemaline bodies1KY CL E G H33985526576OMIM:617114MYOPATHY, MYOFIBRILLAR, 7; MFM73
HP:0100303HP:0003798Nemaline bodies1LMOD3 CL E G H562036649ORPHA:171430Severe congenital nemaline myopathyHP:0040282 - Frequent11
HP:0100303HP:0003798Nemaline bodies1LMOD3 CL E G H562036649ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional11
HP:0100303HP:0100306Muscle fiber hyaline bodies1MYH7 CL E G H46257577OMIM:255160Myopathy, myosin storage, autosomal recessive1269
HP:0100303HP:0003798Nemaline bodies1MYO18B CL E G H8470018150OMIM:616549Klippel-Feil syndrome 4, autosomal recessive, with myopathy and facial dysmorphism5
HP:0100303HP:0003798Nemaline bodies1MYPN CL E G H8466523246ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent217
HP:0100303HP:0003798Nemaline bodies1MYPN CL E G H8466523246OMIM:617336Nemaline myopathy 11, autosomal recessive.217
HP:0100303HP:0003798Nemaline bodies1NDUFB3 CL E G H47097698OMIM:618246Mitochondrial complex I deficiency, nuclear type 25.9
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720OMIM:619334ARTHROGRYPOSIS MULTIPLEX CONGENITA 6; AMC6745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720ORPHA:399103Distal nebulin myopathyHP:0040282 - Frequent745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720ORPHA:171433Intermediate nemaline myopathyHP:0040281 - Very frequent745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720OMIM:256030Nemaline myopathy 2, autosomal recessive745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720ORPHA:171430Severe congenital nemaline myopathyHP:0040282 - Frequent745
HP:0100303HP:0003798Nemaline bodies1NEB CL E G H47037720ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional745
HP:0100303HP:0003798Nemaline bodies1NEFL CL E G H47477739OMIM:607684Charcot-Marie-Tooth disease, axonal, type 2EHP:0040283 - Occasional118
HP:0100303HP:0100301Muscle fiber tubular inclusions1ORAI1 CL E G H8487625896ORPHA:2593Tubular aggregate myopathyHP:0040281 - Very frequent19
HP:0100303HP:0003798Nemaline bodies1PYROXD1 CL E G H7991226162OMIM:617258MYOPATHY, MYOFIBRILLAR, 8; MFM85
HP:0100303HP:0003798Nemaline bodies1RYR1 CL E G H626110483ORPHA:597Central core diseaseHP:0040283 - Occasional1200
HP:0100303HP:0003798Nemaline bodies1RYR1 CL E G H626110483OMIM:117000Central core disease1200
HP:0100303HP:0003798Nemaline bodies1RYR1 CL E G H626110483ORPHA:98905Congenital multicore myopathy with external ophthalmoplegiaHP:0040283 - Occasional1200
HP:0100303HP:0003798Nemaline bodies1RYR1 CL E G H626110483OMIM:255320Minicore myopathy with external ophthalmoplegiaHP:0040283 - Occasional1200
HP:0100303HP:0100301Muscle fiber tubular inclusions1STIM1 CL E G H678611386ORPHA:2593Tubular aggregate myopathyHP:0040281 - Very frequent31
HP:0100303HP:0003798Nemaline bodies1TNNT1 CL E G H713811948OMIM:605355NEMALINE MYOPATHY 5; NEM537
HP:0100303HP:0003798Nemaline bodies1TPM2 CL E G H716912011ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent54
HP:0100303HP:0003798Nemaline bodies1TPM2 CL E G H716912011OMIM:609285Nemaline myopathy 4.54
HP:0100303HP:0003798Nemaline bodies1TPM2 CL E G H716912011ORPHA:171436Typical nemaline myopathyHP:0040283 - Occasional54
HP:0100303HP:0003798Nemaline bodies1TPM3 CL E G H717012012ORPHA:171439Childhood-onset nemaline myopathyHP:0040281 - Very frequent108
HP:0100303HP:0003798Nemaline bodies1TPM3 CL E G H717012012ORPHA:171433Intermediate nemaline myopathyHP:0040281 - Very frequent108
HP:0100303HP:0003798Nemaline bodies1TPM3 CL E G H717012012OMIM:609284Nemaline myopathy 1.108


Genes (30) :ACTA1 ALG14 ALG2 CASQ1 CFL2 DPAGT1 FHL1 FLNC GFPT1 GMPPB KBTBD13 KLHL40 KLHL41 KY LMOD3 MYH7 MYO18B MYOT MYPN NDUFB3 NEB NEFL ORAI1 PYROXD1 RYR1 SMPX STIM1 TNNT1 TPM2 TPM3

Diseases (33) :ORPHA:171439 ORPHA:171433 OMIM:161800 ORPHA:171430 ORPHA:171436 ORPHA:97240 ORPHA:353327 ORPHA:2593 OMIM:610687 OMIM:614750 OMIM:300718 OMIM:609524 OMIM:609273 OMIM:615348 OMIM:617114 OMIM:255160 OMIM:616549 OMIM:609200 OMIM:617336 OMIM:618246 OMIM:619334 ORPHA:399103 OMIM:256030 OMIM:607684 OMIM:617258 OMIM:117000 ORPHA:597 ORPHA:98905 OMIM:255320 OMIM:301075 OMIM:605355 OMIM:609285 OMIM:609284
 

Human Phenotype Ontology(HPO) is developed by the Human Phenotype Ontology Consortium. The version used here is December 15 2022 release.