Variation_Name | GeneID | GeneSymbol | ClinicalSignificance | dbSNP | RCVaccession | TestedInGTR | PhenotypeIDs | Chromosome | Start | Stop | HGVS_c | HGVS_p | HGVS_g | OtherIDs | Disease_ClinVar | NC_000005.9:g.44300489_44312646del | 2255 | FGF10 | Pathogenic | -1 | RCV001726492; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363; MONDO:MONDO:0009936,MedGen:C0456891,OMIM:265430, Orphanet:2257 | 5 | 44300489 | 44312646 | na | na | -1 | - | | |
NM_004465.1(FGF10):c.*5A>T | 2255 | FGF10 | Benign/Likely benign | rs111763965 | RCV000315768|RCV000361118|RCV001692088; | N | MONDO:MONDO:0008397,MedGen:C0158667,OMIM:180920, Orphanet:86815|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MedGen:CN517202 | 5 | 44305092 | 44305092 | T | A | 5:g.44305092T>A | ClinGen:CA3258474 | C0158667 180920 Congenital absence of salivary gland; | |
NM_004465.2(FGF10):c.624A>G (p.Ser208=) | 2255 | FGF10 | Uncertain significance | rs886060653 | RCV000287224|RCV000398807; | N | MONDO:MONDO:0008397,MedGen:C0158667,OMIM:180920, Orphanet:86815|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44305100 | 44305100 | T | C | 5:g.44305100T>C | ClinGen:CA10624890 | C0158667 180920 Congenital absence of salivary gland; | |
NM_004465.2(FGF10):c.550G>A (p.Gly184Arg) | 2255 | FGF10 | Likely pathogenic | rs1554035469 | RCV000659647; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44305174 | 44305174 | C | T | NC_000005.9:g.44305174C>T | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.541A>C (p.Asn181His) | 2255 | FGF10 | Uncertain significance | rs1332768200 | RCV000659646; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44305183 | 44305183 | T | G | 5:g.44305183T>G | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.467T>G (p.Ile156Arg) | 2255 | FGF10 | Pathogenic | rs104893886 | RCV000007967; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44305257 | 44305257 | A | C | 5:g.44305257A>C | ClinGen:CA118869,UniProtKB:O15520#VAR_029889,OMIM:602115.0004 | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.409A>T (p.Lys137Ter) | 2255 | FGF10 | Pathogenic | rs104893887 | RCV000007968|RCV000007969; | N | MONDO:MONDO:0008397,MedGen:C0158667,OMIM:180920, Orphanet:86815|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44310549 | 44310549 | T | A | 5:g.44310549T>A | ClinGen:CA118870,OMIM:602115.0005 | C0158667 180920 Congenital absence of salivary gland; | |
NM_004465.2(FGF10):c.401T>A (p.Met134Lys) | 2255 | FGF10 | Likely pathogenic | rs1554035757 | RCV000659645; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44310557 | 44310557 | A | T | NC_000005.9:g.44310557A>T | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.356del (p.Gly119fs) | 2255 | FGF10 | Likely pathogenic | rs1554035763 | RCV000659644; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44310602 | 44310602 | TC | T | 5:g.44310602_44310602del | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.317G>T (p.Cys106Phe) | 2255 | FGF10 | Pathogenic | rs104893885 | RCV000007966; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388468 | 44388468 | C | A | 5:g.44388468C>A | ClinGen:CA118868,UniProtKB:O15520#VAR_029888,OMIM:602115.0003 | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.256del (p.Thr86fs) | 2255 | FGF10 | Likely pathogenic | rs1554040361 | RCV000659643; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388529 | 44388529 | GT | G | NC_000005.9:g.44388529del | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.240A>C (p.Arg80Ser) | 2255 | FGF10 | Pathogenic | rs104893888 | RCV000007970|RCV000659642; | N | MONDO:MONDO:0008397,MedGen:C0158667,OMIM:180920, Orphanet:86815|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388545 | 44388545 | T | G | 5:g.44388545T>G | ClinGen:CA118872,OMIM:602115.0006 | C0158667 180920 Congenital absence of salivary gland; | |
NM_004465.2(FGF10):c.232del (p.Arg78fs) | 2255 | FGF10 | Likely pathogenic | rs1554040364 | RCV000659641; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388553 | 44388553 | CG | C | 5:g.44388553_44388553del | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_004465.2(FGF10):c.116C>A (p.Ala39Asp) | 2255 | FGF10 | Uncertain significance | rs201790067 | RCV001196292; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388669 | 44388669 | G | T | 5:g.44388669G>T | - | | |
NM_004465.2(FGF10):c.1A>G (p.Met1Val) | 2255 | FGF10 | Likely pathogenic | rs1554040396 | RCV000659640; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 5 | 44388784 | 44388784 | T | C | NC_000005.9:g.44388784T>C | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.*1498_*1502del | 2263 | FGFR2 | Likely benign | rs566259479 | RCV000287957|RCV000291506|RCV000313921|RCV000322912|RCV000345308|RCV000348873|RCV000383456|RCV000379787|RCV000394480; | N | MONDO:MONDO:0007412,MedGen:C1852406,OMIM:123790, Orphanet:1555|MONDO:MONDO:0007400,MedGen:C0795998,OMIM:123150, Orphanet:1540|MONDO:MONDO:0007041,MedGen:C0001193,OMIM:101200, Orphanet:87|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MONDO:M | 10 | 123237869 | 123237873 | ATTTAT | A | NC_000010.10:g.123237872_123237876del | ClinGen:CA10628102 | C0001193 101200 Acrocephalosyndactyly type I; | |
NM_000141.5(FGFR2):c.*641_*644del | 2263 | FGFR2 | Likely benign | rs548465887 | RCV000285303|RCV000291375|RCV000302982|RCV000342660|RCV000343940|RCV000355448|RCV000389928|RCV000396781|RCV000404772; | N | MONDO:MONDO:0007042,MedGen:C0175699,OMIM:101400, Orphanet:794|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MONDO:MONDO:0007412,MedGen:C1852406,OMIM:123790, Orphanet:1555|MONDO:MONDO:0007041,MedGen:C0001193,OMIM:101200, Orphanet:87|Human Ph | 10 | 123238727 | 123238730 | GATTA | G | NC_000010.10:g.123238730_123238733del | ClinGen:CA10631069 | C0001193 101200 Acrocephalosyndactyly type I; | |
NM_000141.5(FGFR2):c.2021C>T (p.Ala674Val) | 2263 | FGFR2 | Likely pathogenic | rs1554907337 | RCV000659649; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 10 | 123246904 | 123246904 | G | A | NC_000010.10:g.123246904G>A | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.1947_1949del (p.Arg649_Asp650delinsSer) | 2263 | FGFR2 | Pathogenic | rs879253720 | RCV000014223; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 10 | 123247542 | 123247544 | ATCT | A | 10:g.123247542_123247544del | ClinGen:CA10575519,OMIM:176943.0036 | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.1942G>A (p.Ala648Thr) | 2263 | FGFR2 | Pathogenic | rs121918508 | RCV000014222|RCV001291623; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MedGen:CN517202 | 10 | 123247549 | 123247549 | C | T | 10:g.123247549C>T | ClinGen:CA122998,UniProtKB:P21802#VAR_029885,OMIM:176943.0035 | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.1882G>A (p.Ala628Thr) | 2263 | FGFR2 | Pathogenic | rs121918509 | RCV000014224|RCV000414415; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MedGen:CN517202 | 10 | 123247609 | 123247609 | C | T | 10:g.123247609C>T | ClinGen:CA123000,UniProtKB:P21802#VAR_029884,OMIM:176943.0037 | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.1544C>T (p.Ala515Val) | 2263 | FGFR2 | Pathogenic | rs1847510893 | RCV001250712; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 10 | 123260357 | 123260357 | G | A | 10:g.123260357G>A | - | | |
NM_000141.5(FGFR2):c.1477G>T (p.Gly493Trp) | 2263 | FGFR2 | Likely pathogenic | rs1554917471 | RCV000659648; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 10 | 123260424 | 123260424 | C | A | NC_000010.10:g.123260424C>A | - | C0265269 149730 Levy-Hollister syndrome; | |
NM_000141.5(FGFR2):c.110-22TC[3] | 2263 | FGFR2 | Conflicting interpretations of pathogenicity | rs773932794 | RCV000261993|RCV000267981|RCV000275299|RCV000311649|RCV000317100|RCV000323000|RCV000356791|RCV000371758|RCV000377753|RCV002059527; | N | MedGen:CN043619|MONDO:MONDO:0007400,MedGen:C0795998,OMIM:123150, Orphanet:1540|MONDO:MONDO:0007041,MedGen:C0001193,OMIM:101200, Orphanet:87|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363|MONDO:MONDO:0007043,MedGen:C0220658,OMIM:101600,Orpha | 10 | 123325233 | 123325234 | GGA | G | NC_000010.10:g.123325233GA[3] | ClinGen:CA5721218 | C0001193 101200 Acrocephalosyndactyly type I; | |
NM_000142.5(FGFR3):c.1331C>T (p.Ser444Phe) | 2261 | FGFR3 | not provided | rs761325047 | RCV000709871; | N | MONDO:MONDO:0007037,MedGen:C0001080,OMIM:100800, Orphanet:15; MONDO:MONDO:0012504,MedGen:C1864852,OMIM:610474, Orphanet:85164; MONDO:MONDO:0012833,MedGen:C2677099,OMIM:612247, Orphanet:93262; MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363; MONDO | 4 | 1806615 | 1806615 | C | T | NC_000004.11:g.1806615C>T | - | | |
NM_000142.5(FGFR3):c.1537G>A (p.Asp513Asn) | 2261 | FGFR3 | Uncertain significance | rs121913112 | RCV001580446|RCV000017764; | N | MedGen:CN517202|MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 4 | 1807288 | 1807288 | G | A | 4:g.1807288G>A | ClinGen:CA126384,UniProtKB:P22607#VAR_029887,OMIM:134934.0028 | C0265269 149730 Levy-Hollister syndrome; | |
NM_000142.5(FGFR3):c.1882G>A (p.Asp628Asn) | 2261 | FGFR3 | Pathogenic | rs1453271838 | RCV000656386; | N | MONDO:MONDO:0007872,MedGen:C0265269,OMIM:149730, Orphanet:2363 | 4 | 1807823 | 1807823 | G | A | NC_000004.11:g.1807823G>A | OMIM:134934.0038 | C0265269 149730 Levy-Hollister syndrome; | |