View genomic variant #0000026897
Chromosome |
1 |
Allele |
Unknown |
Affects function (as reported) |
Not classified |
Affects function (by curator) |
Not classified |
Type |
- |
DNA change (genomic) (Relative to hg19 / GRCh37) |
g.17359676C>A |
Published as |
- |
GERP |
- |
Segregation |
- |
DB-ID |
chr1_000442 |
MSCV |
- |
dbSNP ID |
- |
Frequency |
- |
Sources |
; |
Reference |
- |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
Retrieve |
Owner |
Lishuang Shen |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV000252587; RCV001636774; RCV001807164; RCV001807163; RCV001807165; RCV001807162; | Chromosome | 1:17359676..17359676 | Allele frequencies from ESP | 0.95233 | Allele frequencies from ExAC | 0.97189 | Allele frequencies from TGP | 0.95907 | ClinVar Allele ID | 249532 | Disease database name and identifier | MedGen:CN169374|MedGen:C3661900|Human Phenotype Ontology:HP:0100723, MONDO:MONDO:0011719, MeSH:D046152, MedGen:C0238198, OMIM:606764, Orphanet:44890|MONDO:MONDO:0007273, MedGen:C1861848, OMIM:115310, Orphanet:29072|MONDO:MONDO:0030974, MedGen:C5543176, OMIM:619224|Human Phenotype Ontology:HP:0002666, MONDO:MONDO:0008233, MedGen:C0031511, OMIM:171300, Orphanet:29072 | ClinVar preferred disease name | not specified|not provided|Gastrointestinal stroma tumor|Paragangliomas 4|Mitochondrial complex 2 deficiency, nuclear type 4|Pheochromocytoma | HGVS variant names | NC 000001.10:g.17359676C>A | ClinVar review status | criteria provided, multiple submitters, no conflicts | Clinical Significance | Benign | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA089539 | Gene symbol:Gene id. | SDHB:6390 | Molecular consequence | SO:0001627|intron variant | Allele origin | germline | dbSNP ID | 1022580 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
None Ensembl Variant Phenotype Information:
None
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