View genomic variant #0000023339
Chromosome |
M |
Allele |
Unknown |
Affects function (as reported) |
Affects function |
Affects function (by curator) |
Affects function |
Type |
- |
DNA change (genomic) (Relative to hg19 / GRCh37) |
m.14487T>C |
Published as |
- |
GERP |
- |
Segregation |
- |
DB-ID |
chrM_000034 See all 2 reported entries |
MSCV |
MSCV_0001497 |
dbSNP ID |
- |
Frequency |
- |
Sources |
; clinvar; |
Reference |
- |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
Variant not found in online data sets |
Owner |
LOVD |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV000010333; RCV000010334; RCV000144020; RCV002247307; RCV003162239; | Chromosome | M:14487..14487 | ClinVar Allele ID | 24733 | Disease database name and identifier | MedGen:C1838951|MONDO:MONDO:0044970, MeSH:D028361, MedGen:C0751651, Orphanet:68380|MedGen:C1838954|Human Phenotype Ontology:HP:0001086, Human Phenotype Ontology:HP:0001112, MONDO:MONDO:0010788, MedGen:C0917796, OMIM:535000, Orphanet:104|MONDO:MONDO:0009723, MedGen:C0023264, OMIM:256000, Orphanet:506 | ClinVar preferred disease name | Leigh syndrome due to mitochondrial complex I deficiency|Mitochondrial disease|Striatal necrosis, bilateral, with dystonia|Leber optic atrophy|Leigh syndrome | HGVS variant names | NC 012920.1:m.14487T>C | ClinVar review status | reviewed by expert panel | Clinical Significance | Pathogenic | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA120627|Genetic Testing Registry (GTR):GTR000591967|Genetic Testing Registry (GTR):GTR000591975|Genetic Testing Registry (GTR):GTR000591976|OMIM:516006.0007 | Gene symbol:Gene id. | MT-ND6:4541 | Allele origin | germline | dbSNP ID | 199476109 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
Locus | Disease | Allele | Amino_Acid_Change | Homoplasmy | Heteroplasmy | STATUS | Note | MT-ND6 | Dystonia/Leigh Disease/Ataxia | T14487C | M-V | - | + | Cfrm | Coding_and_Control_Region |
Ensembl Variant Phenotype Information:
None
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