View genomic variant #0000018682

Chromosome 19
Allele Unknown
Affects function (as reported) Does not affect function
Affects function (by curator) Does not affect function
Type -
DNA change (genomic) (Relative to hg19 / GRCh37) g.30193182G>A
Published as -
GERP -
Segregation -
DB-ID C19orf12_000025
MSCV MSCV_0018682
dbSNP ID -
Frequency -
Sources ; clinvar;
Reference -
Variant remarks -
Genetic origin -
Variant_disease -
Average frequency (large NGS studies) Variant not found in online data sets
Owner LOVD




Variant on transcripts

1 entry on 1 page. Showing entry 1.
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Gene     

Transcript ID     

AscendingTranscript     

Variant ID     

Affects function     

Location     

Exon     

DNA change (cDNA)     

Position     

RNA change     

Protein     

PolyPhen     

GVS function     

Splice distance     

SIFT     
C19orf12 00003109 NM_031448.4 0000018682 ./. - - c.*437C>T - r.(=) p.(=) - - - -
Legend  


ClinVar @ MSeqDR

RCVaccession RCV000383953;
Chromosome 19:30193182..30193182
ClinVar Allele ID 348526
Disease database name and identifier MedGen:C3280371, OMIM:614298, Orphanet:ORPHA289560
ClinVar preferred disease name Neurodegeneration with brain iron accumulation 4
HGVS variant names NC 000019.9:g.30193182G>A
ClinVar review status criteria provided, single submitter
Clinical Significance Uncertain significance
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Variant clinical sources reported Illumina Clinical Services Laboratory, Illumina:557546
Gene symbol:Gene id. C19orf12:83636
Molecular consequence SO:0001624|3 prime UTR variant
Allele origin germline
dbSNP ID 1048104
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

ClinVar @ MSeqDR

RCVaccession RCV000287587;
Chromosome 19:30193182..30193182
Allele frequencies from ExAC 0.41501
Allele frequencies from TGP 0.26298
ClinVar Allele ID 348527
Disease database name and identifier MedGen:C3280371, OMIM:614298, Orphanet:ORPHA289560
ClinVar preferred disease name Neurodegeneration with brain iron accumulation 4
HGVS variant names NC 000019.9:g.30193182G>C
ClinVar review status criteria provided, single submitter
Clinical Significance Benign
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Variant clinical sources reported Illumina Clinical Services Laboratory, Illumina:22824
Gene symbol:Gene id. C19orf12:83636
Molecular consequence SO:0001624|3 prime UTR variant
Allele origin germline
dbSNP ID 1048104
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

None