View genomic variant #0000015275

Chromosome 1
Allele Unknown
Affects function (as reported) Probably does not affect function
Affects function (by curator) Probably does not affect function
Type -
DNA change (genomic) (Relative to hg19 / GRCh37) g.33478877C>T
Published as -
GERP -
Segregation -
DB-ID AK2_000012
MSCV MSCV_0015275
dbSNP ID -
Frequency -
Sources ; clinvar;
Reference -
Variant remarks -
Genetic origin -
Variant_disease -
Average frequency (large NGS studies) 0.00946 View details
Owner LOVD




Variant on transcripts

5 entries on 1 page. Showing entries 1 - 5.
Legend  

Gene     

Transcript ID     

AscendingTranscript     

Variant ID     

Affects function     

Location     

Exon     

DNA change (cDNA)     

Protein     

PolyPhen     

GVS function     

Splice distance     

SIFT     
AK2 00000423 NM_001199199.1 0000015275 ./. - - c.601G>A p.(Ala201Thr) - - - -
AK2 00000426 NM_001625.3 0000015275 ./. - - c.625G>A p.(Ala209Thr) - - - -
AK2 00000424 NM_013411.4 0000015275 ./. - - c.625G>A p.(Ala209Thr) - - - -
AK2 00000425 NR_037591.1 0000015275 ./. - - n.826G>A - - - - -
AK2 00000427 NR_037592.1 0000015275 ./. - - n.826G>A - - - - -
Legend  


ClinVar @ MSeqDR

RCVaccession RCV000820415;
Chromosome 1:33478877..33478877
ClinVar Allele ID 627771
Disease database name and identifier MONDO:MONDO:0009973, MedGen:C0272167, OMIM:267500, Orphanet:ORPHA33355, SNOMED CT:111584000
ClinVar preferred disease name Reticular dysgenesis
HGVS variant names NC 000001.10:g.33478877C>A
ClinVar review status criteria provided, single submitter
Clinical Significance Uncertain significance
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Gene symbol:Gene id. AK2:204
Molecular consequence SO:0001583|missense variant, SO:0001619|non-coding transcript variant, SO:0001624|3 prime UTR variant
Allele origin germline
dbSNP ID 12116440
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

ClinVar @ MSeqDR

RCVaccession RCV000123572; RCV000440986; RCV001082448;
Chromosome 1:33478877..33478877
Allele frequencies from ESP 0.00946
Allele frequencies from ExAC 0.00739
Allele frequencies from TGP 0.00339
ClinVar Allele ID 140030
Disease database name and identifier MONDO:MONDO:0009973, MedGen:C0272167, OMIM:267500, Orphanet:ORPHA33355, SNOMED CT:111584000|MedGen:CN169374|MedGen:CN517202
ClinVar preferred disease name Reticular dysgenesis|not specified|not provided
HGVS variant names NC 000001.10:g.33478877C>T
ClinVar review status criteria provided, multiple submitters, no conflicts
Clinical Significance Benign/Likely benign
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Variant clinical sources reported UniProtKB (protein):P54819#VAR 050032
Gene symbol:Gene id. AK2:204
Molecular consequence SO:0001583|missense variant, SO:0001619|non-coding transcript variant, SO:0001624|3 prime UTR variant
Allele origin germline
dbSNP ID 12116440
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

None