View genomic variant #0000003622
Chromosome |
X |
Allele |
Unknown |
Affects function (as reported) |
Affects function |
Affects function (by curator) |
Affects function |
Type |
subst |
DNA change (genomic) (Relative to hg19 / GRCh37) |
g.18602452G>A |
Published as |
- |
GERP |
5.600 |
Segregation |
- |
DB-ID |
CDKL5_000005 |
MSCV |
MSCV_0003622 |
dbSNP ID |
rs267606715 |
Frequency |
- |
Sources |
; clinvar; |
Reference |
19793311;23757202 |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
Variant not found in online data sets |
Owner |
LOVD |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV000080074; RCV000169920; RCV001201864; RCV001507061; | Chromosome | X:18602452..18602452 | ClinVar Allele ID | 100013 | Disease database name and identifier | MONDO:MONDO:0100039, MedGen:CN296942|MONDO:MONDO:0010396, MedGen:C4750718, OMIM:300672, Orphanet:1934, Orphanet:3451, Orphanet:505652|MedGen:CN128785|MedGen:C3661900 | ClinVar preferred disease name | CDKL5 disorder|Developmental and epileptic encephalopathy, 2|Angelman syndrome-like|not provided | HGVS variant names | NC 000023.10:g.18602452G>A | ClinVar review status | reviewed by expert panel | Clinical Significance | Pathogenic | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA199289|RettBASE (CDKL5):132|UniProtKB:O76039#VAR 071103 | Gene symbol:Gene id. | CDKL5:6792 | Molecular consequence | SO:0001583|missense variant | Allele origin | | dbSNP ID | 267606715 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
ClinVar @ MSeqDR | RCVaccession | RCV000012262; RCV001035195; | Chromosome | X:18602452..18602452 | ClinVar Allele ID | 33489 | Disease database name and identifier | MedGen:CN128785|MONDO:MONDO:0010396, MedGen:C4750718, OMIM:300672, Orphanet:1934, Orphanet:3451, Orphanet:505652 | ClinVar preferred disease name | Angelman syndrome-like|Developmental and epileptic encephalopathy, 2 | HGVS variant names | NC 000023.10:g.18602452G>C | ClinVar review status | criteria provided, single submitter | Clinical Significance | Pathogenic | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA121529|OMIM:300203.0014|RettBASE (CDKL5):64|UniProtKB:O76039#VAR 058026 | Gene symbol:Gene id. | CDKL5:6792 | Molecular consequence | SO:0001583|missense variant | Allele origin | | dbSNP ID | 267606715 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
ClinVar @ MSeqDR | RCVaccession | RCV003085978; | Chromosome | X:18602452..18602452 | ClinVar Allele ID | 1890561 | Disease database name and identifier | MONDO:MONDO:0010396, MedGen:C4750718, OMIM:300672, Orphanet:1934, Orphanet:3451, Orphanet:505652|MedGen:CN128785 | ClinVar preferred disease name | Developmental and epileptic encephalopathy, 2|Angelman syndrome-like | HGVS variant names | NC 000023.10:g.18602452G>T | ClinVar review status | criteria provided, single submitter | Clinical Significance | Pathogenic | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Gene symbol:Gene id. | CDKL5:6792 | Molecular consequence | SO:0001583|missense variant | Allele origin | germline | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
None Ensembl Variant Phenotype Information:
None
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