View genomic variant #0000003617

Chromosome X
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Type subst
DNA change (genomic) (Relative to hg19 / GRCh37) g.18582616C>T
Published as -
GERP 4.850
Segregation -
DB-ID CDKL5_000010
MSCV MSCV_0003617
dbSNP ID rs122460159
Frequency -
Sources ; clinvar;
Reference 17993579;19793311
Variant remarks -
Genetic origin -
Average frequency (large NGS studies) Variant not found in online data sets
Owner LOVD




Variant on transcripts

2 entries on 1 page. Showing entries 1 - 2.
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Gene     

Transcript ID     

AscendingTranscript     

Variant ID     

Affects function     

Location     

Exon     

DNA change (cDNA)     

Protein     

PolyPhen     

GVS function     

Splice distance     

SIFT     
CDKL5 00000603 NM_001037343.1 0000003617 +/+ - 5/22 c.119C>T p.(Ala40Val) possibly_damaging(0.798) missense_variant - deleterious(0)
CDKL5 00000602 NM_003159.2 0000003617 +/+ - 5/22 c.119C>T p.(Ala40Val) possibly_damaging(0.798) missense_variant - deleterious(0)
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ClinVar @ MSeqDR

RCVaccession RCV000133317; RCV000012257;
Chromosome X:18582616..18582616
ClinVar Allele ID 26541
Disease database name and identifier MedGen:C1839333, OMIM:300672|MedGen:C2748910, Orphanet:ORPHA3095
ClinVar preferred disease name Early infantile epileptic encephalopathy 2|Atypical Rett syndrome
HGVS variant names NC 000023.10:g.18582616C>T
ClinVar review status no assertion criteria provided
Clinical Significance Pathogenic
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Variant clinical sources reported OMIM Allelic Variant:300203.0009|RettBASE (CDKL5):44|UniProtKB (protein):O76039#VAR 058022
Gene symbol:Gene id. CDKL5:6792
Molecular consequence SO:0001583|missense variant
Allele origin
dbSNP ID 122460159
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

variation_namechromseq_region_startseq_region_endallele_stringminor_alleleminor_allele_freqvariation_setPhenotype_description
rs122460159X1858261618582616C/TOMIM phenotype variantsEPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 2
CM081207X1858261618582616HGMD_MUTATIONHGMD-PUBLIC variantsAnnotated by HGMD but no phenotype description is publicly available