View genomic variant #0000001820
Chromosome |
1 |
Allele |
Unknown |
Affects function (as reported) |
Does not affect function |
Affects function (by curator) |
Does not affect function |
Type |
subst |
DNA change (genomic) (Relative to hg19 / GRCh37) |
g.68904660A>C |
Published as |
- |
GERP |
-0.301 |
Segregation |
- |
DB-ID |
RPE65_000006 |
MSCV |
MSCV_0001820 |
dbSNP ID |
rs149916178 |
Frequency |
- |
Sources |
; clinvar; ensembl; |
Reference |
19431183;23757202 |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
0.00077 View details |
Owner |
LOVD |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV000085235; RCV001074533; RCV001233846; RCV003467003; | Chromosome | 1:68904660..68904661 | ClinVar Allele ID | 104792 | Disease database name and identifier | Human Phenotype Ontology:HP:0000556, Human Phenotype Ontology:HP:0007736, Human Phenotype Ontology:HP:0007910, Human Phenotype Ontology:HP:0007974, Human Phenotype Ontology:HP:0007982, MONDO:MONDO:0019118, MeSH:D058499, MedGen:C0854723, Orphanet:71862|MONDO:MONDO:0008765, MedGen:C1859844, OMIM:204100, Orphanet:65|MONDO:MONDO:0013425, MedGen:C3151086, OMIM:613794, Orphanet:791|MedGen:C3661900 | ClinVar preferred disease name | Retinal dystrophy|Leber congenital amaurosis 2|Retinitis pigmentosa 20|not provided | HGVS variant names | NC 000001.10:g.68904662dup | ClinVar review status | criteria provided, multiple submitters, no conflicts | Clinical Significance | Pathogenic | Variant type | Duplication | Sequence Ontology for variant type | SO:1000035 | Variant clinical sources reported | ClinGen:CA226596 | Gene symbol:Gene id. | RPE65:6121 | Molecular consequence | SO:0001589|frameshift variant | Allele origin | germline | dbSNP ID | 61752906 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
ClinVar @ MSeqDR | RCVaccession | RCV000078656; RCV000945854; RCV001102426; RCV001102427; RCV001258234; RCV001275282; RCV001727561; RCV003460744; | Chromosome | 1:68904660..68904660 | Allele frequencies from ESP | 0.00077 | Allele frequencies from ExAC | 0.00536 | Allele frequencies from TGP | 0.00499 | ClinVar Allele ID | 98767 | Disease database name and identifier | MONDO:MONDO:0100368, MedGen:CN305526|MedGen:C3661900|MedGen:CN169374|MONDO:MONDO:0008765, MedGen:C1859844, OMIM:204100, Orphanet:65|MONDO:MONDO:0013425, MedGen:C3151086, OMIM:613794, Orphanet:791|MONDO:MONDO:0018998, MeSH:D057130, MedGen:C0339527, OMIM:PS204000, Orphanet:65|Human Phenotype Ontology:HP:0000547, MONDO:MONDO:0019200, MeSH:D012174, MedGen:C0035334, OMIM:268000, OMIM:PS268000, Orphanet:791|MONDO:MONDO:0012849, MedGen:C2676788, OMIM:612285, Orphanet:2318 | ClinVar preferred disease name | RPE65-related recessive retinopathy|not provided|not specified|Leber congenital amaurosis 2|Retinitis pigmentosa 20|Leber congenital amaurosis|Retinitis pigmentosa|Joubert syndrome 9 | HGVS variant names | NC 000001.10:g.68904660A>C | ClinVar review status | reviewed by expert panel | Clinical Significance | Benign | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA146044|UniProtKB:Q16518#VAR 017136 | Gene symbol:Gene id. | RPE65:6121 | Molecular consequence | SO:0001583|missense variant | Allele origin | germline | dbSNP ID | 149916178 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
None Ensembl Variant Phenotype Information:
None
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