View genomic variant #0000001809
Chromosome |
1 |
Allele |
Unknown |
Affects function (as reported) |
Probably affects function |
Affects function (by curator) |
Probably affects function |
Type |
subst |
DNA change (genomic) (Relative to hg19 / GRCh37) |
g.53678936G>A |
Published as |
- |
GERP |
5.900 |
Segregation |
- |
DB-ID |
CPT2_000014 |
MSCV |
MSCV_0001809 |
dbSNP ID |
rs186044004 |
Frequency |
- |
Sources |
; ensembl; |
Reference |
- |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
Variant not found in online data sets |
Owner |
LOVD |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV000202475; RCV000591616; RCV003453044; RCV003453045; RCV003453046; RCV003453047; | Chromosome | 1:53678936..53678936 | Allele frequencies from ExAC | 0.00002 | Allele frequencies from TGP | 0.00020 | ClinVar Allele ID | 136315 | Disease database name and identifier | MONDO:MONDO:0015515, MedGen:C0342790, Orphanet:157|MedGen:C3661900|MONDO:MONDO:0013633, MedGen:C3280160, OMIM:614212, Orphanet:263524|MONDO:MONDO:0010914, MedGen:C1833511, OMIM:600649, Orphanet:228305|MONDO:MONDO:0009704, MedGen:C1833508, OMIM:255110, Orphanet:157, Orphanet:228302|MONDO:MONDO:0012136, MedGen:C1833518, OMIM:608836, Orphanet:228308 | ClinVar preferred disease name | Carnitine palmitoyltransferase II deficiency|not provided|Encephalopathy, acute, infection-induced, susceptibility to, 4|Carnitine palmitoyl transferase II deficiency, severe infantile form|Carnitine palmitoyl transferase II deficiency, myopathic form|Carnitine palmitoyl transferase II deficiency, neonatal form | HGVS variant names | NC 000001.10:g.53678936G>A | ClinVar review status | criteria provided, conflicting interpretations | Clinical Significance | Conflicting interpretations of pathogenicity | Conflicting clinical significance | Pathogenic(1)|Uncertain significance(6) | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA347728|Genetic Testing Registry (GTR):GTR000604056|UniProtKB:P23786#VAR 007971 | Gene symbol:Gene id. | CPT2:1376 | Molecular consequence | SO:0001583|missense variant | Allele origin | germline | dbSNP ID | 186044004 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
None Ensembl Variant Phenotype Information:
None
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