View genomic variant #0000001690

Chromosome 1
Allele Unknown
Affects function (as reported) Probably affects function
Affects function (by curator) Probably affects function
Type subst
DNA change (genomic) (Relative to hg19 / GRCh37) g.201332519G>A
Published as -
GERP 2.900
Segregation -
DB-ID TNNT2_000009
MSCV MSCV_0001690
dbSNP ID rs397516469
Frequency -
Sources ; clinvar;
Reference -
Variant remarks -
Genetic origin -
Average frequency (large NGS studies) Variant not found in online data sets
Owner LOVD




Variant on transcripts

2 entries on 1 page. Showing entries 1 - 2.
Legend  

Gene     

Transcript ID     

AscendingTranscript     

Variant ID     

Affects function     

DNA change (cDNA)     

Protein     

GVS function     

Position     

Exon     

PolyPhen     

RNA change     

SIFT     
TNNT2 00003241 NM_000364.2 0000001690 +?/+? c.505C>T p.(Arg169*) stop_gained - 12/17 - r.(?) -
TNNT2 00003346 NM_000364.3 0000001690 +?/+? c.505C>T p.(Arg169*) stop_gained - 12/17 - r.(?) -
Legend  


ClinVar @ MSeqDR

RCVaccession RCV000036594;
Chromosome 1:201332519..201332519
Allele frequencies from ExAC 0.00002
ClinVar Allele ID 52815
Disease database name and identifier MedGen:CN169374
ClinVar preferred disease name not specified
HGVS variant names NC 000001.10:g.201332519G>A
ClinVar review status criteria provided, single submitter
Clinical Significance Uncertain significance
Variant type single nucleotide variant
Sequence Ontology for variant type SO:0001483
Gene symbol:Gene id. TNNT2:7139
Molecular consequence SO:0001587|nonsense
Allele origin germline
dbSNP ID 397516469
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

None