Genomic variant #0000000909

Chromosome 22
Allele Unknown
Affects function (reported) Affects function
Affects function (concluded) Affects function
Type subst
DNA change (genomic) (Relative to hg19 / GRCh37) g.30067894T>C
Published as -
GERP 5.560
Segregation -
DB-ID NF2_000005
dbSNP ID rs74315492
Frequency -
Sources ; clinvar;
Reference 4000972;8379998
Variant remarks -
Genetic origin -
Average frequency (large NGS studies) Variant not found in online data sets
Owner LOVD




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

DNA change (cDNA)     

Protein     

GVS function     

Position     

Exon     

PolyPhen     

RNA change     

SIFT     
NF2 NM_000268.3 +/+ c.1079T>C p.(Leu360Pro) missense_variant - 11/16 probably_damaging(0.999) r.(?) deleterious(0)


ClinVar @ MSeqDR

18321
MedGen:C0027832,OMIM:101000,Orphanet:ORPHA637,SNOMED CT:92503002
Neurofibromatosis, type 2
HGVS variant names NC 000022.10:g.30067894T>C
no assertion criteria provided
Clinical Significance
single nucleotide variant
SO:0001483
OMIM Allelic Variant:607379.0001|UniProtKB (protein):P35240#VAR 000822
Gene symbol:Gene id. NF2:4771
SO:0001583|missense variant,SO:0001627|intron variant
0
dbSNP ID 74315492
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

variation_namechromseq_region_startseq_region_endallele_stringminor_alleleminor_allele_freqvariation_setPhenotype_description
rs74315492223006789430067894T/COMIM phenotype variantsNEUROFIBROMATOSIS, TYPE II
rs74315492223006789430067894T/COMIM phenotype variantsNeurofibromatosis, type 2
CM930517223006789430067894HGMD_MUTATIONHGMD-PUBLIC variantsAnnotated by HGMD but no phenotype description is publicly available