View genomic variant #0000000168
Chromosome |
1 |
Allele |
Unknown |
Affects function (as reported) |
Probably affects function |
Affects function (by curator) |
Probably affects function |
Type |
subst |
DNA change (genomic) (Relative to hg19 / GRCh37) |
g.216498754T>G |
Published as |
- |
GERP |
5.360 |
Segregation |
- |
DB-ID |
USH2A_000044 |
MSCV |
MSCV_0000168 |
dbSNP ID |
rs369522997 |
Frequency |
- |
Sources |
; clinvar; |
Reference |
10909849;15025721;17405132;22681893;10729113;15241801 |
Variant remarks |
- |
Genetic origin |
- |
Variant_disease |
- |
Average frequency (large NGS studies) |
8.0E-5 View details |
Owner |
LOVD |
Variant on transcripts
ClinVar @ MSeqDR | RCVaccession | RCV001979478; | Chromosome | 1:216498754..216498754 | ClinVar Allele ID | 1448744 | Disease database name and identifier | MedGen:C3661900 | ClinVar preferred disease name | not provided | HGVS variant names | NC 000001.10:g.216498754T>C | ClinVar review status | criteria provided, single submitter | Clinical Significance | Uncertain significance | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Gene symbol:Gene id. | USH2A:7399 | Molecular consequence | SO:0001583|missense variant | Allele origin | germline | dbSNP ID | 369522997 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
ClinVar @ MSeqDR | RCVaccession | RCV000041668; RCV000411779; RCV000710349; RCV000727128; RCV000824797; RCV001074772; RCV001723627; | Chromosome | 1:216498754..216498754 | Allele frequencies from ESP | 0.00008 | Allele frequencies from ExAC | 0.00010 | ClinVar Allele ID | 57509 | Disease database name and identifier | MONDO:MONDO:0019501, MeSH:D052245, MedGen:C0271097, OMIM:PS276900, Orphanet:886|MedGen:C5680250, Orphanet:96210|Human Phenotype Ontology:HP:0000556, Human Phenotype Ontology:HP:0007736, Human Phenotype Ontology:HP:0007910, Human Phenotype Ontology:HP:0007974, Human Phenotype Ontology:HP:0007982, MONDO:MONDO:0019118, MeSH:D058499, MedGen:C0854723, Orphanet:71862|MedGen:C3661900|Human Phenotype Ontology:HP:0000547, MONDO:MONDO:0019200, MeSH:D012174, MedGen:C0035334, OMIM:268000, OMIM:PS268000, Orphanet:791|MONDO:MONDO:0013436, MedGen:C3151138, OMIM:613809, Orphanet:791|MONDO:MONDO:0010169, MedGen:C1848634, OMIM:276901, Orphanet:231178, Orphanet:886 | ClinVar preferred disease name | Usher syndrome|Rare genetic deafness|Retinal dystrophy|not provided|Retinitis pigmentosa|Retinitis pigmentosa 39|Usher syndrome type 2A | HGVS variant names | NC 000001.10:g.216498754T>G | ClinVar review status | reviewed by expert panel | Clinical Significance | Pathogenic | Variant type | single nucleotide variant | Sequence Ontology for variant type | SO:0001483 | Variant clinical sources reported | ClinGen:CA262054|UniProtKB:O75445#VAR 025766 | Gene symbol:Gene id. | USH2A:7399 | Molecular consequence | SO:0001583|missense variant | Allele origin | germline | dbSNP ID | 369522997 | Variant Flags | : |
ClinVar @ MSeqDR as full content XML tree
MSeqDR View Variant at Gbrowse Mitomap Mitochondrial Variant Phenotype Information:
None Ensembl Variant Phenotype Information:
None
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