View genomic variant #0000000032

Chromosome 1
Allele Unknown
Affects function (reported) Affects function
Affects function (concluded) Affects function
Type subst
DNA change (genomic) (Relative to hg19 / GRCh37) g.53676706G>T
Published as -
GERP 4.870
Segregation -
DB-ID CPT2_000005
dbSNP ID rs74315299
Frequency -
Sources ; clinvar; ensembl;
Reference 15622536
Variant remarks -
Genetic origin -
Average frequency (large NGS studies) Variant not found in online data sets
Owner LOVD




Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Location     

Exon     

DNA change (cDNA)     

Protein     

PolyPhen     

GVS function     

Splice distance     

SIFT     
CPT2 NM_000098.2 +/+ - 4/5 c.1360G>T p.(Glu454*) - stop_gained - -


ClinVar @ MSeqDR

24005
MedGen:C1833508,OMIM:255110,Orphanet:ORPHA228302
Carnitine palmitoyltransferase II deficiency, myopathic, stress-induced
HGVS variant names NC 000001.10:g.53676706G>T
no assertion criteria provided
Clinical Significance
single nucleotide variant
SO:0001483
OMIM Allelic Variant:600650.0015
Gene symbol:Gene id. CPT2:1376
SO:0001587|nonsense
1
dbSNP ID 74315299
Variant Flags
:

ClinVar @ MSeqDR as full content XML tree

MSeqDR View Variant at Gbrowse

Mitomap Mitochondrial Variant Phenotype Information:

None

Ensembl Variant Phenotype Information:

variation_namechromseq_region_startseq_region_endallele_stringminor_alleleminor_allele_freqvariation_setPhenotype_description
rs7431529915367670653676706G/TOMIM phenotype variantsCARNITINE PALMITOYLTRANSFERASE II DEFICIENCY, LATE-ONSET
CM05024115367670653676706HGMD_MUTATIONHGMD-PUBLIC variantsAnnotated by HGMD but no phenotype description is publicly available